482c57f8be47d8f9b099c056d9e25deb *DESCRIPTION
ea3b5e04b413d669250186ce5a94eb34 *NAMESPACE
c8d67c78439892d08d313c8d27aee89c *NEWS
3157d6c8af052874e7bbafbbf2e6a445 *R/data.R
4b21303952cac601b06c8d26fd2d613b *R/get_bam_bed.R
e5b01abaa90d726d5d2e3f83dff0b284 *R/get_coverage_scDNA.R
373253d0480ef4e151dc3e8bfb155028 *R/get_gc.R
1f2a17e479f617237c7166d5b4582c2c *R/get_gini.R
1619136a92823a2f51cec5f1cacc3466 *R/get_mapp.R
2cd899151df0c24acc2502cc5e6c080c *R/get_samp_QC.R
466d5b1ce061bb16652d8a1fbfb2008f *R/initialize_ploidy.R
c0a947b7a45e5907271067d5a26cd9e1 *R/initialize_ploidy_group.R
1fa8faeb99ae5696555f2bf2db745149 *R/normalize_codex2_ns_noK.R
69dcca05a08dd6a68a50c8d2be2c3e81 *R/normalize_scope.R
5daff6c73300a98932a1d3c6b06ce11a *R/normalize_scope_foreach.R
a57a2321719201f94ada8959c4b456e5 *R/normalize_scope_group.R
c1ed651d9c47013b7092d0af81c92b0c *R/perform_qc.R
efe63b3201991d80d9c072d02442b598 *R/plot_EM_fit.R
1be0f17c10e9e27d1960e3c9a2a7935f *R/plot_iCN.R
7ed426f30be2567df8e2babd3ed5c23b *R/segment_CBScs.R
8cbe8a3899fd91f6f6aa4d23c8683584 *README.md
467bae34f4029468659ade40a0b3c034 *build/vignette.rds
7870cae7b8aacc96ff12ff1ea8bef1c3 *data/QCmetric.scopeDemo.rda
ff42934b56eb20af2511d556ce09aa01 *data/coverageObj.scopeDemo.rda
a2acc96e1b080e80c43cb868b9dc7f65 *data/demo.rda
71e604fe297f36b410c4ee9d68722ad7 *data/iCN_sim.rda
5b4a707fa6ad8161db4db4bd4f0ab28f *data/normObj.scopeDemo.rda
b0ae58ec0ae10638d02b7817b1157512 *data/ref.scopeDemo.rda
a0910f3bbff2d905c6f6b066f3984641 *inst/doc/SCOPE_vignette.R
11cb2a46107f3f49f3d233a449a401fd *inst/doc/SCOPE_vignette.Rmd
738b125f4603ff4e4ee8ca09bb98ae36 *inst/doc/SCOPE_vignette.html
1e9c0988e992371032f30ee5ca2dbce3 *inst/docs/split_script.py
2cf26fcc20b37c1725bd8d541adceeda *man/QCmetric.scopeDemo.Rd
837e2ba5d58dbd5f6eca0fa5956df53e *man/Y_sim.Rd
679dcd1250da026a3bd12ca59e9a7619 *man/coverageObj.scopeDemo.Rd
068b95b6b902f649d042a07c8fea957a *man/get_bam_bed.Rd
a8b2849e1559a7397a21ee70acb2f04a *man/get_coverage_scDNA.Rd
e7ca038db630af5ceaccea311f17afc9 *man/get_gc.Rd
d3a993bacfdfca4ee99fc71356def2cf *man/get_gini.Rd
08418e550a779de978b2836fcf22f026 *man/get_mapp.Rd
54b6a405d1119596b90b3c282e6790df *man/get_samp_QC.Rd
37d4564a06e42ca9d37d0867aebc18b9 *man/iCN_sim.Rd
fee8d1bc2e883afd48977e1eb1fec568 *man/initialize_ploidy.Rd
4bd46461738fbd8f1eb19c8c8e960536 *man/initialize_ploidy_group.Rd
8fe39a4a2602fbee52a04fa00f846979 *man/normObj.scopeDemo.Rd
a6a23042909347a3aab290d2c7f4c04f *man/normalize_codex2_ns_noK.Rd
fe94d92e57d4d3fc1dd778574ac723c4 *man/normalize_scope.Rd
4e15e3e91ed0621c8dc66e7b89d45afc *man/normalize_scope_foreach.Rd
9e2a36f0279d09dca65f375941d8563d *man/normalize_scope_group.Rd
82058bd353b0cb3e921eb17c46163bcc *man/perform_qc.Rd
e3e9981010ed075f8f327a8dffe43f17 *man/plot_EM_fit.Rd
9be430698989c566288645f2c70ee92b *man/plot_iCN.Rd
80202937282eb3406c41ac4c07cffae4 *man/ref.scopeDemo.Rd
bb7bac5764983f3c313984a3f93f3e9d *man/ref_sim.Rd
4bdfcb9b7809009ee370e135fdacebb0 *man/segment_CBScs.Rd
25eb3db7fadbc891f54eb79d8cc03c20 *tests/testthat.R
f5dbd10e1da4a9b26ab05dd280a0c0e7 *tests/testthat/test_get_bam_bed.R
24ad02a917ef8680dd7a7ed2fd907ceb *tests/testthat/test_get_gini.R
1303d1f727d86a1deb86dc846b141310 *tests/testthat/test_initialize_ploidy.R
0c2184e88a672068f1ab4c6f8d76e957 *tests/testthat/test_normalize_scope.R
73935c96636a7649466435fd312432ca *tests/testthat/test_segment_CBScs.R
11cb2a46107f3f49f3d233a449a401fd *vignettes/SCOPE_vignette.Rmd
