8aecf936d269cdcf60cfbcad321dadf8 *DESCRIPTION
e238c8d105fe2b847bcd1b06f64a8669 *NAMESPACE
cde89e7a8a77f7907d4d9cf45bca0ee8 *NEWS
ff9f5014b3c8af1a8673b111363a2783 *R/data.R
9ffad78871d09202ae96a299b541b242 *R/functions.R
442731d148b6a02d1d7aef39d6542f1f *R/tpcaResult-class.R
80a9ab144884e3529651143443eee49e *README.md
35a860f88f6f423c60ba90dedd32f9ac *build/vignette.rds
11b88bf7d003980828b7674c208e2ea9 *data/datalist
5230bd77312e2ca2f6ffc29ff235ea61 *data/ori_et_al_complex_ppis.rda
42d4e6d48f434afca3e336186717f7d3 *data/ori_et_al_complexes_df.rda
bc86e8af28186fa9aefb7371063fec6f *data/string_ppi_df.rda
6a1b081764ac0691ba6cc669d9f40ae5 *inst/CITATION
ec6c8b587c27ec471d5aec950b841f75 *inst/doc/Rtpca.R
1d3940f7ec2701c99ea15b0fec40cd31 *inst/doc/Rtpca.Rmd
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477e0e4a312a8614b22abad03768311a *man/CommonFeatures-tpcaResult-method.Rd
7f5390fd6cd4899c4213ed6b88dc8274 *man/ComplexAnnotation-tpcaResult-method.Rd
9071516caa2b4c2317eb65172f68f752 *man/ComplexBackgroundDistributionList-tpcaResult-method.Rd
b0a468e3dafe3a1a25efff1b08bd0441 *man/ComplexRocTable-tpcaResult-method.Rd
db50792d55d3091e680a964fc61c5193 *man/ContrastCondName-tpcaResult-method.Rd
7db37d28bb6947a544017eb981ba45e0 *man/ContrastDistMat-tpcaResult-method.Rd
5d04a00edcda9ed12e42d789c9c0f47f *man/ContrastList-tpcaResult-method.Rd
684c8a4f77f84650b490e35490084bb5 *man/CtrlCondName-tpcaResult-method.Rd
76e6b2ecbf9ecfd22d32281368435c52 *man/DistMat-tpcaResult-method.Rd
bb379471b479a2ade87f9d1b8616684e *man/DistMethod-tpcaResult-method.Rd
728378574de2ebca8b2bd83c66d2cf06 *man/ObjList-tpcaResult-method.Rd
9107a7c7f34d6796fca6f83d75e97507 *man/PPiAnnotation-tpcaResult-method.Rd
b75d08a4d0ea968e1a8d5f196a2a683c *man/PPiRocTable-tpcaResult-method.Rd
c595c8f0beb3d21117811d436c22b2a0 *man/PPiRocTableAnno-tpcaResult-method.Rd
eeaab564aed04e85824e278183a636a4 *man/SetCommonFeatures-tpcaResult-method.Rd
ef7d76062dd9895110c9a2fa2d1b0e5b *man/SetComplexAnnotation-tpcaResult-method.Rd
7e47fa915fe7ccebe345ed3d1b30b450 *man/SetComplexBackgroundDistributionList-tpcaResult-method.Rd
1c3d1d5d291fc1f0e3c55dfc7bdabcdb *man/SetComplexRocTable-tpcaResult-method.Rd
6ab022bf6fb9a70ba02a8e073ff41aab *man/SetContrastCondName-tpcaResult-method.Rd
753a22e616a2649df00f70459694d00f *man/SetContrastDistMat-tpcaResult-method.Rd
68f3fdd1ec3c94c6694e559c48e92bed *man/SetCtrlCondName-tpcaResult-method.Rd
e581be6ccd53244db3426ed1d711ef63 *man/SetDiffTpcaResultTable-tpcaResult-method.Rd
07fbcd3391de96589c4c0687a2768da1 *man/SetDistMat-tpcaResult-method.Rd
676af68578f44eb7a1dd0ea6443c38fe *man/SetDistMethod-tpcaResult-method.Rd
61cb466ab4710c2336299ecf5d8d2b28 *man/SetPPiRocTable-tpcaResult-method.Rd
acffd78decaa10eb909247d55a618f7c *man/SetPPiRocTableAnno-tpcaResult-method.Rd
62a6429b95997385e2790b1c2380415b *man/SetSummaryMethod-tpcaResult-method.Rd
bbc9efa24f7962f018f7df3d589f4f10 *man/SetTpcaResultTable-tpcaResult-method.Rd
f958ba7cfc58a5bf50342d7d7a71fcea *man/SummaryMethod-tpcaResult-method.Rd
7213b15463c047100c6dfe39c724aaf6 *man/createDistMat.Rd
9f6fe2c5522cb6faccfefd7b36b4a73a *man/diffTpcaResultTable-tpcaResult-method.Rd
73a6b3c36d4211748a4ced82316232d6 *man/ori_et_al_complex_ppis.Rd
75b65d79cc1d55f45aae7ed0d9a8d013 *man/ori_et_al_complexes_df.Rd
6d21fac91f9963972b88075165020bbf *man/plotComplexRoc.Rd
757ec8cdff4d41e10fe7657c27afd8bd *man/plotDiffTpcaVolcano.Rd
baa5d8109130c53766456eddfe496cd5 *man/plotPPiProfiles.Rd
48cb6456bf32217f5155a1f711030502 *man/plotPPiRoc.Rd
a2a22a49dd65599cb7f6f50dabb38f77 *man/plotTpcaVolcano.Rd
2887b63e52fb81917c9b5987bf5eeaac *man/runDiffTPCA.Rd
792517747e42d53ee237a260e86b447e *man/runTPCA.Rd
a942fbd0d5f0d4bfaef0687312addf97 *man/string_ppi_df.Rd
547b2b40fb10b7a1be5eb6acd3ba681a *man/tpcaResult-class.Rd
bf56c69a6ab91d6da0bf3c607744a310 *man/tpcaResultTable-tpcaResult-method.Rd
34dbdb05aad3fbde1608b7d5378c5d05 *tests/testthat.R
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4fa296e030ba1b02bb43820cb17e4484 *tests/testthat/test-combineCondDistMatsFstat.R
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38f83b7a47fefdab6840a33840898b6d *tests/testthat/test-createDistMatTpcaObj.R
2ccedff48dfd1e7d232e2494e01aedbb *tests/testthat/test-distMat2AnnotatedPPiDf.R
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135bf2b0185df2c5705f413208cb5443 *tests/testthat/test-getMatList.R
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6ce3401fc0e0385f1680ded05f7589db *tests/testthat/test-intersectComplexAnnotation.R
42425e87f0992c5ad57f398f53ea3cc4 *tests/testthat/test-plotDiffTpcaVolcano.R
159bc13f8528a9baf36746fc412d6b7a *tests/testthat/test-plotPPiProfiles.R
064d8511c33334aed72ce8a88809e021 *tests/testthat/test-plotPPiRoc.R
b1c1dc23dfc773ef6ae162e9ebc7df40 *tests/testthat/test-plotTpcaVolcano.R
7efd33f1d35c48136a5fc8e1211ad872 *tests/testthat/test-runDiffTPCA.R
9a7b5dd9c5c8da4ef6fb28cfa987b916 *tests/testthat/test-runTPCA.R
dc189af8e5e5c5742fd16983a3aa8b44 *tests/testthat/test-sampleBackgroundDistribution.R
bfcfc9534b5668ddcf09e056c8f168a2 *tests/testthat/test-tpcaResult-class-generic-CommonFeatures.R
df463b39ea95ce490720ddb714a0176f *tests/testthat/test-tpcaResult-class-generic-ObjList.R
1d3940f7ec2701c99ea15b0fec40cd31 *vignettes/Rtpca.Rmd
a105e8d00885a07130291cca43c1cfa9 *vignettes/cell.csl
b4660f3c07b43608e7e0f05d0d072f4f *vignettes/refs.bib
