ab91695cd22821018ef237bb6548eb83 *DESCRIPTION
1e3a82a4ea11f34ae7601a7b39b089fb *NAMESPACE
4f47af3d7015911009c606d20617d19a *NEWS
112b7dcb683b9ba06b5c7ee11d25ebb3 *R/GRanges2GRangesList.R
7682077ad99caca337934615d8d7bdc6 *R/GRangesList2GRanges.R
95ff341c0d5416c053881c4e860292c7 *R/calculateShift.R
777ec3506a1d38e8c5085041422ff385 *R/distanceTx.R
2c7beae822a6a49f6d9ca0359942cce8 *R/extractRegions.R
2ee37258f6d50ce64781ae65badb1bab *R/getFormatCorrect.R
b9d1804a5398bc60b9a93f5139c7f1a2 *R/getPermSpaceByFeatures.R
b368347a02e2bb10e0cf97550dbdb7f5 *R/getPermSpaceByTxID.R
a9cd1104f254dfc0537c761ab77d81b1 *R/getPermSpaceByType.R
e2385564b7760b4f0008e5f2cf8af08e *R/getPvalZscore.R
2e861072f62e310834d8f8dbc8cb8814 *R/getStopCodon.R
af427c3b09ad2b259092b68145e46ab1 *R/getTransInfo.R
e59d73ebe3bc2e62b7702c12fa56f11c *R/globals.R
a6fc6eb11baa233cd954b6401332f49f *R/overlapCountsTx.R
69b9335c5af1f777c28ceda017f8c170 *R/overlapCountsTxIA.R
fc45975a1f0e157ae954534ff13c0c39 *R/overlapWidthTx.R
e06ee4b506b3b10f87adfe1ee73afb98 *R/permTestTx.R
9cd75a14c995608d6d999a9d84a5cd9e *R/permTestTxIA.R
391d343011eb96503934b537dbd0d0bd *R/permTestTxIA_customPick.R
34bb79dc63a0ca3ffe0456f548b93984 *R/permTestTx_customAll.R
e4971cf00587b891758ee260d62c435c *R/permTestTx_customPick.R
95d85ad0b85650e57c5df01a646e2116 *R/plotPermResults.R
327b07a78e069e447dfc53db90c1d7f2 *R/plotShiftedZScoreTx.R
3fd43818a2b29a29c22f0e1c78f266eb *R/randomizeFeaturesTx.R
cc90b0d07bd6aaed26203fc12d8871ac *R/randomizeFeaturesTxIA.R
f0d4158a33ce71e98c1fb2f85c47c499 *R/randomizeTransByOrder.R
e1e8c4f6da93ea11807d1c7359759fca *R/randomizeTx.R
3cb5845972096e47f500f584a3485cc3 *R/shiftTx.R
8fa5a7c5e5da93a2d9030d0f80029d1f *R/shiftedZScoreTx.R
4d516442b4953e7229a0d1b7dc881546 *R/vector2GRangesList.R
0a13d0bf1d998af81ee80958f49cde60 *README.md
65e4aafcdead80f446c07f50553b94f4 *build/vignette.rds
56b57b17c9da75833269b266ff2dd34c *inst/doc/RgnTX.R
8453ea2dbd79af880a4b3249fefa1772 *inst/doc/RgnTX.Rmd
3a8d33b7ae70c2749dda16d7fc9972f2 *inst/doc/RgnTX.html
7df7f131e310e3b4580b5a719cafbd5c *inst/extdata/m6A_sites_data.rds
47272b8087ec84b17141fe88bca64d52 *inst/extdata/permTestTx_results.rds
6c0e298833f8fd3eddd9485a54d9d1fc *inst/extdata/permTestTx_results2.rds
9cdd9170394635ad126adfb2a76cb11c *inst/extdata/permTestTx_results3.rds
0f2238de219497b8613b1cb4f1ec78dc *inst/extdata/randomRegionSet1.rds
670c362c1e90a66af61a9567a1c24056 *inst/extdata/randomRegionSet2.rds
aea8e6fa131f8f1e6c7d60e0d963b948 *inst/extdata/shiftedZScoreTx_results1.rds
77113524a42703e495e34d0a0ddde0d6 *inst/extdata/shiftedZScoreTx_results2.rds
b8b714b4977de65ad3af05f8bb6d16b6 *inst/extdata/transIDs_data.rds
e168386fa72e762db674ca3717505653 *man/GRanges2GRangesList.Rd
211e914d86e9c3aa5091af9fa3615d73 *man/GRangesList2GRanges.Rd
31fa07cd94847d26a76141051c7be71c *man/calculateShift.Rd
613d3b710f9a93f6b3233e47299f22a2 *man/distanceTx.Rd
12bbafcb549dc48154a7477fa4691026 *man/extractRegions.Rd
ed6a2cf866f30bb28c429adc28a7918b *man/getFormatCorrect.Rd
1c002d76af5b6ac005807b5dac704f11 *man/getPermSpaceByFeatures.Rd
62fe8bdf37e00eafc4df3e39eb335e37 *man/getPermSpaceByTxID.Rd
e27782d0565e8442ec5abe818a933f9b *man/getPermSpaceByType.Rd
6df5b471937391dc279b4f6ee169d0a2 *man/getPvalZscore.Rd
137656f0fb0a323b97fe3f904097deb7 *man/getStopCodon.Rd
644cec1eb29e620f4ae8784b05e9ae2d *man/getTransInfo.Rd
3371c346e454f27075c187109c51f6eb *man/overlapCountsTx.Rd
eb65a9bd0e3bf0c5999ba1352226c31a *man/overlapCountsTxIA.Rd
9c1be3e5672353de84f49283cc0d409a *man/overlapWidthTx.Rd
2625f614fa50f93c87494f348debce40 *man/permTestTx.Rd
35e2ee0eb9b77cfd88767526f7930f69 *man/permTestTxIA.Rd
6602639bb1ae9a926fbd48cef7f175c1 *man/permTestTxIA_customPick.Rd
d72402079074a5026d371d34acdbe7a3 *man/permTestTx_customAll.Rd
cfd2651da4efb8eefc5e6e4bc3acacd7 *man/permTestTx_customPick.Rd
eb8373ddf88037ca223bb98c20f020d3 *man/plotPermResults.Rd
68b7b190a5624a18a6c3ffa3fd639597 *man/plotShiftedZScoreTx.Rd
29ddafb59c67d91c2a2a08770e53ee07 *man/randomizeFeaturesTx.Rd
d9781355ca2b84dc3817de7eefcd1875 *man/randomizeFeaturesTxIA.Rd
ea2ccab1d80a069868d7890221f35d18 *man/randomizeTransByOrder.Rd
fa56d6d7a55dc748eacd52ee09f30efc *man/randomizeTx.Rd
4fd63fd425ae1ae7b840fcdbe76aad35 *man/shiftTx.Rd
45a6dd9d079e8fe08181a8d6f161a592 *man/shiftedZScoreTx.Rd
e583873da62c2398370b0e4ee49aae45 *man/vector2GRangesList.Rd
8fa419c05b307ee7d00c1e46218960bd *tests/testthat.R
35670689c883b297120081613923aac5 *tests/testthat/test_evaluation_functions.R
55f6149207d584c982fde6fea559f84b *tests/testthat/test_features_process.R
809f57404039859129a0bdd0ab406046 *tests/testthat/test_permutation_test_functions.R
2cd321d85c0c0f1e93f15f36bc014505 *tests/testthat/test_randomization_functions.R
8453ea2dbd79af880a4b3249fefa1772 *vignettes/RgnTX.Rmd
b25bafd773dadae4bdf174cb01b62663 *vignettes/figures/section2.1.png
6d95f83cf4b880e769226a162944a875 *vignettes/figures/section2.2.png
b7cbe78a787890ca991ee4fa9b5c7c00 *vignettes/figures/section2.3.png
9ddc0e72c8542849ef7af2d1dcae40a0 *vignettes/figures/section2.4.png
5670e03c227425690d24ce0247de3bb3 *vignettes/figures/section4.1.png
c321a9427299ee9cd890032cc64ad38d *vignettes/figures/section4.2.png
722704e3b86e220569ff1cfddfd4159e *vignettes/figures/section5.2.png
2a13a4abf9cadafada2af1f6301238cc *vignettes/figures/section5.5.png
9221634dfcaddef2d71c6bbfa3dd1b41 *vignettes/figures/section7.png
