16e7476ea70de12b64bd4df2e1b6bd5f *DESCRIPTION
337282366d52d1da10933e70a0328910 *NAMESPACE
fd015169400039d46c5f368ef3d7147c *R/00_importAnnotations.R
c3945da94e952d07724dcdedfe72eb6f *R/00_importRankings.R
33cdb13862fb2701835557457f448d7a *R/01_calcAUC.R
d9266ff3849bdc42b7cd45298ff84f09 *R/02_addMotifAnnotation.R
a777db9c9f7c0068b1ff97f00488aa31 *R/03_addSignificantGenes.R
245970143447938449a4093ac84d5ce6 *R/10_cisTarget.R
05854d7ede894febd832f6b795aa1051 *R/aux_addLogo.R
6a38c2631dbc5dda7195229ffabfca52 *R/aux_convertToTargetRegions.R
db8f1fb8e7614962d962c52c7fc6d930 *R/aux_getDbRegionsLoc.R
1906865301f14105c0de42030eee78d0 *R/aux_reRank.R
14804652c2743b02ebb24ef9d1130135 *R/class_aucScores.R
8f04e099c32c569f0e5d82b4e181c784 *R/class_rankingRcisTarget.R
c22334c2238395c4e565fdc91b4e2075 *R/data_dbRegionsLoc.R
52633a118f4eaf329234c72e385dd83c *R/data_motifAnnotations.R
d7f2d500c62430bbd728ba447e1ec0e5 *R/priv_calcErn.R
938ba2e5e8176e841707408ee271d95e *R/priv_plotRCC.R
7db718e8d0d75e7157eccd175d7b0f95 *README.md
16578ac01208f1ff2928d0c8c8a3953a *build/vignette.rds
9a73ea66fd5b36beca8d490d8f037d1c *data/datalist
e90c0b7791b9e02307d6b0f8af9545bc *data/dbRegionsLoc_hg19_v9.RData
507a20f6e645b6fcecc4b7d23c11e15e *data/motifAnnotations_dmel.RData
29d10acce4b6eb9e976ab803b06ccf2f *data/motifAnnotations_dmel_v8.RData
6fd599aab09018666139154552e475e5 *data/motifAnnotations_dmel_v9.RData
969bc1885b4246675ca798beb6b28f49 *data/motifAnnotations_hgnc.RData
472065f5e608bf230dd68f272dff429e *data/motifAnnotations_hgnc_v9.RData
c3d9cea91c864e5a90019b5a79dd6b9c *data/motifAnnotations_mgi.RData
fcd8882f49030eb205ade30cea3bd962 *data/motifAnnotations_mgi_v9.RData
b3ee9e7691cde321d6033c54e4eee492 *inst/CITATION
06d1dc32b3786b803932e88bf0a9c2cc *inst/NEWS
24b378a763f5b9c4837d1bb51e1042c1 *inst/doc/RcisTarget_MainTutorial.R
758f29f59b92b14bc62094549245fd93 *inst/doc/RcisTarget_MainTutorial.Rmd
ba29d49e4f2ebe370fc1a75563825d6e *inst/doc/RcisTarget_MainTutorial.html
a1e2fce158e87babbd0bfaeb974b9215 *inst/doc/Tutorial_AnalysisOfGenomicRegions.R
83ed0fd16a036df3629a8c570547d72a *inst/doc/Tutorial_AnalysisOfGenomicRegions.Rmd
4d6f485053e5930ba1f0e026910b7839 *inst/doc/Tutorial_AnalysisOfGenomicRegions.html
b02581d889c627e326d9b83b56073b9c *inst/doc/Tutorial_AnalysisWithBackground.R
e291036ac6b5c8e2ac4167d0d1d169f1 *inst/doc/Tutorial_AnalysisWithBackground.Rmd
7319435d2ae928264c5dce5a5c8bf8f9 *inst/doc/Tutorial_AnalysisWithBackground.html
b7efabf6ce02a639e2feb57a58c1474d *inst/examples/Encode_GATA1_peaks.bed
0e533ba065534665886cdd89fdbc4ba0 *inst/examples/example_addLogo.R
81de579fc6c4fcc16814200dbb7e654d *inst/examples/example_addMotifAnnotation.R
e5a7b2b5dbdf1aeb58fdee9c0b39ccea *inst/examples/example_addSignificantGenes.R
4b5885405bb990730080124818739392 *inst/examples/example_aucScores_class.R
89b96defdb00fa362719cd5ac64b8daa *inst/examples/example_cisTarget.R
d589961b42346bd927b028e9c4e10d95 *inst/examples/example_reRank.R
2bd1518c431e3990a2d73ffd3da9bdf5 *inst/examples/example_showLogo.R
9cf93d574e15d886067a9600ff13e2f1 *inst/examples/example_workflow.R
d92d889a1b85ccf42da689bf3fc7c781 *inst/examples/hypoxiaGeneSet.txt
59c5f21d32b1cfe6d1277df4113c4aa1 *inst/examples/motifEnrichmentTable_wGenes.RData
263de45eb81b5719cdd64192d1148c98 *inst/examples/randomGeneSet.txt
e7b7d7966508b8895d3741b5b406e43c *man/RcisTarget.Rd
c7dea442711bcb24a7cda1478861adbb *man/addLogo.Rd
d37a4306de18b2a9c7d726ee5d2b2dcb *man/addMotifAnnotation.Rd
e8bfd7888413cbdb502ccf0a87fd71f9 *man/addSignificantGenes.Rd
a28e4ff81042d5b2871c40f65250ec83 *man/aucScores-class.Rd
ebeb5ade0a3e897361cdb983cade84b4 *man/calcAUC.Rd
0e8eb49dae2b4269eca1c95f4b30aaef *man/convertToTargetRegions.Rd
27182bd1003dbabc02a300852a50b39e *man/dbRegionsLoc.Rd
d5cf92a1739436c01bdff1b302d57346 *man/getDbRegionsLoc.Rd
d553112e010c8478eda01edff2b523b2 *man/getMotifAnnotation.Rd
6558676b878a356835a41cd1de8c31ce *man/importAnnotations.Rd
9c2098769f0c813fb5f4945e065252b6 *man/importRankings.Rd
309e150a28ef0da928104523d2cce0f5 *man/motifAnnotations.Rd
996546a1344096e922689f70f9696cdb *man/rankingRcisTarget-class.Rd
1aa70c7275a92f8dc17689e0febeaf77 *man/reRank.Rd
7133b0863a9c1dea00821b2843392130 *man/showLogo.Rd
2544c41cf841d079aa863f95ab8e2c23 *tests/testthat.R
a40386b7296c9090582d7a8c89adbe41 *tests/testthat/test_RcisTarget.R
758f29f59b92b14bc62094549245fd93 *vignettes/RcisTarget_MainTutorial.Rmd
83ed0fd16a036df3629a8c570547d72a *vignettes/Tutorial_AnalysisOfGenomicRegions.Rmd
c7c4e274a923f5ef69f00b0b7d86bb73 *vignettes/Tutorial_AnalysisOfGenomicRegions.nb.html
e291036ac6b5c8e2ac4167d0d1d169f1 *vignettes/Tutorial_AnalysisWithBackground.Rmd
8d93a34c8a68395cc2c919cbe45841d8 *vignettes/corrected.css
