6c85dbef0eedc435650d11b9a1f1461f *DESCRIPTION
eb410b582a39695eefc7649ee2ed2756 *NAMESPACE
f2d5520cbcacdb07b74f57dcd4a74a81 *NEWS
a71be190e62b46a6ab89e1415a8267c7 *R/AllGenerics.R
b414cf59a21d318057790f7b0329b749 *R/Gviz-ModifiedSequenceTrack-class.R
713100480170079ca522a8b64dd6e4ff *R/Modifier-Inosine-class.R
1e7a6fe4f21f098003a0727a9618892d *R/Modifier-Inosine-viz.R
0b403d05f7d37684647c8e592cf110d6 *R/Modifier-class.R
0db1e794d17df6284044728c4185b3e0 *R/Modifier-roc.R
e8eef499d34580b72f30516ed83e6f67 *R/Modifier-subset.R
879208270dcd1a8f8dd25df8ee41a674 *R/Modifier-utils.R
4b303974f37f506be64d55497023678d *R/Modifier-viz.R
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8c4c807e3314285aad00fc102ff04aca *R/ModifierSet-comparison.R
a9cc8de8707d37b0bf69f9993f9ca4f9 *R/ModifierSet-viz.R
8838969de9f096e3a1e20994a16d2b2e *R/RNAmodR-external-functions.R
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61a5ca29cb11f56e65bbd67cd0be7b03 *R/RNAmodR.R
19b31a5701773759fbe6a0009327bb02 *R/SequenceData-class.R
be58eb8cbc0b69e8d23008b858da4415 *R/SequenceData-coverage.R
77e25ed9b10bf580e63e6545c3d196b6 *R/SequenceData-end-pos.R
d7b71aadfb65ba2f600514ab7c3a826b *R/SequenceData-normalized-end-pos.R
118c1647e452a10ea4fd2b632a1f7c70 *R/SequenceData-pileup.R
5c1a1c1d0c7d39e677d6ca3f24c4e493 *R/SequenceData-protected-end-pos.R
456b30bd3a7a3a141a52b9253a5ed16c *R/SequenceData-stats.R
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4dcead4fc07334303011bf5e4cfb2549 *R/settings.R
dfb66ca458460f990b97fc12ce101609 *R/utils-bam.R
216d4373a2c19a913f155a8118c81de4 *R/utils.R
df37e416ad7c0c43d0b67dd06c0ea3dc *README.md
e50b7bcf75c88e99fae8df543d8f2a65 *build/vignette.rds
b1cecda07b10761c46e4f61c5c2c0411 *data/csd.rda
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79c8de4d836eaed6ebc056166902e1c0 *data/esd.rda
d215dadc3996f6cc437f9501ca98612b *data/msi.rda
9c364609e33125ccf5c198e7f7f1b3d5 *data/ne3sd.rda
63470bf852bb5413b83e3e360d68e177 *data/ne5sd.rda
f3e03995e2384dca4693739a0caff237 *data/pesd.rda
c0073572210620bfd39b2f53878a02a7 *data/psd.rda
5d9631a11368b2123889630584db4ef2 *data/sdl.rda
982897491b2fb22d26b6c0ac0a8f6807 *data/sds.rda
f01329a4b2f94390ae7249be7c26bf52 *inst/CITATION
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5b4655ad2527c4b92a92b8ae002a5827 *inst/doc/RNAmodR.Rmd
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a30cacc2a6f0e759ed29ebeec304b65d *man/CoverageSequenceData-class.Rd
b0ff5e76f549d3198c48bc28446cdb2c *man/EndSequenceData-class.Rd
cbfbd6242e9ed2c4c26504f01ff74fbe *man/ModInosine-functions.Rd
edcb2f2446286c12e5e72d740296672a *man/ModInosine-internals.Rd
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575f9d80e2236c1a5d0cbd5e1ac86f14 *man/Modifier-functions.Rd
012a3a501bd640bdb696f97747b07481 *man/ModifierSet-class.Rd
cc3fb028a935b0c73873afc4f048920c *man/NormEndSequenceData-class.Rd
41cd96c1f662d9622ebda2a3109def3c *man/PileupSequenceData-class.Rd
db95fc2e21d1113e665b83d1da0f5528 *man/ProtectedEndSequenceData-class.Rd
495d23eff1a8295137597f7bba308a5d *man/RNAmodR-datasets.Rd
d3daa82cf825c1bd7440075598e8c794 *man/RNAmodR-development.Rd
48a19c2c1daba159715ad0b35721d46c *man/RNAmodR-internals.Rd
509a6a6c6c14f7e0ebe37a2fcbf7ab58 *man/RNAmodR-package.Rd
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80190cfeccc2647585d3ffc237fa9b00 *man/SequenceDataSet-class.Rd
0064154368a823f58f366b9cba190e68 *man/SequenceModDNAStringSetTrack-class.Rd
615eed0405d91e220f505b9aa921a01a *man/SequenceModRNAStringSetTrack-class.Rd
e2a680c48033d26f870e2b6a8411a06c *man/aggregate.Rd
a62cbd6255adf507d6fb6b9315abfc5d *man/compareByCoord.Rd
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44ad2155b5a122ae781a4de92e39d457 *man/plotROC.Rd
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81df5fea1ac9d76f0e3ffa8d9fbd04da *man/stats.Rd
cc22648c53a553373743f58a7170d8af *man/subsetByCoord.Rd
7e3ece58515499f744fb468b25a6c6db *tests/testthat.R
d873f14819de73e880196a9c07a68bfe *tests/testthat/test-0SequenceData.R
a28861b9d4acd75dd9e85e097d029b68 *tests/testthat/test-0SequenceDataFrame.R
12407f407cd9230d7cceba26ae0a8a24 *tests/testthat/test-0settings.R
5c65b2726c191b20cecca4b6901cef4f *tests/testthat/test-1SequenceDataSet.R
72b55be8099e36c0458e46e01be76f1a *tests/testthat/test-2Modifier.R
6464526eae892d08b61d83291975d74d *tests/testthat/test-3normalization.R
e399bef1eb0893d20876c2b167ba777d *tests/testthat/test-3subset.R
b69729fb715e1c0080c16f2fc59fe74b *tests/testthat/test-3zcomparison.R
45b99d89b3c80ce257c9ecacaccfc2d3 *tests/testthat/test-4roc.R
51adac1822667a2353e3019d08ff3b4b *tests/testthat/test-8visualization.R
1e6d5364a06d437480e9ca50e87acd0b *tests/testthat/test-9show.R
5b4655ad2527c4b92a92b8ae002a5827 *vignettes/RNAmodR.Rmd
9b954a31e831a2e833163ce220199f56 *vignettes/RNAmodR.creation.Rmd
980d1ad20c2a433775371368f7f266ee *vignettes/RNAmodR.png
fd03b0196aee3970a22e994cfca50b3f *vignettes/RNAmodR.svg
9f3f7e8eb7cec7be95cba7f044abe660 *vignettes/references.bib
