3d5082b85bda29fa530114b93b7db119 *DESCRIPTION
b234ee4d69f5fce4486a80fdaf4a4263 *LICENSE
b09ae0466c4952297d85eeabbd81a97f *NAMESPACE
7dd92ea46fac6f88e9bdb6967e67b416 *NEWS
4dd797d913988fb528e4fd4deb8d7e06 *R/Collapse.R
e80500f44eae2521fbffd2b3435879b0 *R/ConsSeq.R
14f943a0a84f190011def074e09de9fe *R/CorrectGapsAndNs.R
a61ac155dfbb186346183f7b59d8a9fc *R/DBrule.R
23d2f3dfe6bcb4e7ac41ab2c82384594 *R/DNA.dist.R
6976810d7fbf57c2c94915f6df7a92a6 *R/DSFT.R
ed850abdcbbbaa3dd8d22736ab84bff5 *R/Diverge.R
d4e32e02aba728532dcc603c07cc9394 *R/DottedAlignment.R
745920e946adb09db41417a89c162db9 *R/FAD.R
b5ce97d0aaf11b65852a802889868504 *R/FreqMat.R
6af9d6b9c3baf11335681ef13ed6b5cd *R/GenerateVars.R
32d25c50f6ed8671286cb8b35cbd9f9b *R/GetInfProfile.R
cf65ff96836b9ee776e6b66008f64efa *R/GetQSData.R
2bee26602e34351f1c243bb0e4cf4127 *R/GetRandomSeq.R
eba4fb57a6fa76ab452de364ac2f14f8 *R/GiniSimpson.R
19c916a26169c359c909735f6960d720 *R/HCq.R
d8929f3d64ba1649326ae4237fde6cb7 *R/Hill.R
c230b71da367a5163059f0d22d7188a2 *R/IntersectStrandHpls.R
53e6611bdd78f93367bdf266d9f169e8 *R/MutationFreq.R
997b74982f04960e0d2e54f63a5e1387 *R/MutsTbl.R
a6f0ea6d7890b26af51f2dba185ebcaf *R/NucleotideDiversity.R
47954b6c13318ba36b4459f0c5601e87 *R/PolyDist.R
d60ee7464c22942b18e2cf8f7bac79d2 *R/Rao.R
9400555c5e24940f287d0bf47dad1580 *R/ReadAmplSeqs.R
ccc1a738395858912938b4c3c2a367e3 *R/Recollapse.R
7e6216f5cab6c5f114faaea797571ae7 *R/Renyi.R
55e64bf9ca901a3ce76fa598479c344e *R/ReportVariants.R
93016df69f3b1e944d4583581adf3d20 *R/SegSites.R
c5c86a61c83a8ffd3eb6100312acaf0a *R/Shannon.R
44fd5ef14bcb2b70cbe2b29d0af4b0be *R/SortByMutations.R
226533734fadf6acd5bf2fd094caf035 *R/SummaryMuts.R
e6fc41772a28c332960ff9f88d3b0b9a *R/TotalMutations.R
9eb26a1ee755a209a798e89fc7c46fc4 *R/UniqueMutations.R
d3f3585d1c658758561075068f1b105f *R/fn.ab.R
1d42b85186d47eb5ecce5841b1b3fb55 *R/geom.series.R
ebae6487ddf06bb7c7bc94aeb30cec71 *README.md
79bb7068e04c8806074c65251ece4eff *build/partial.rdb
9f7f4a4fe514b307bff8b310921bc443 *build/vignette.rds
b16f2a58bfde299d335132651425a0f3 *inst/doc/QSUtils-Alignment.R
2a7c78d963064db3bb72fa1e2946f9c3 *inst/doc/QSUtils-Alignment.Rmd
26b7564300873da20ea941bd317c47bc *inst/doc/QSUtils-Alignment.html
586bb4b989273f354515cdab42652679 *inst/doc/QSutils-Diversity.R
72829e7bc2f0b9f5f2ca9ace828bddc2 *inst/doc/QSutils-Diversity.Rmd
023aabd30eca62a474f6b2cd520a5eef *inst/doc/QSutils-Diversity.html
f93d8d11613484a688e0f39697c04d13 *inst/doc/QSutils-Simulation.R
16548d64511cb89aeaded333bafbb585 *inst/doc/QSutils-Simulation.Rmd
e9f23946f13b077eb504d5368b0fa12f *inst/doc/QSutils-Simulation.html
3f6acbb29008be2e92450c8e3baaa15c *inst/extdata/GenotypeStandards_A-H.fas
af85be54d3cfd2dc45637677bea7eed0 *inst/extdata/Toy.GapsAndNs.fna
afa325b4e712a52499ea5f3e4cc68ea4 *inst/extdata/ToyData_10_50_1000.fna
16ab0f61e1146b09bb3760eda1d5b479 *inst/extdata/ToyData_FWReads.fna
3b7459cc4531e07adb934f720591f51d *inst/extdata/ToyData_RVReads.fna
6a8ced1d0e5954528c55777df9219adc *inst/extdata/Unknown-Genotype.fna
fc7922332cfbbe0a2f63f5a7b4cc962f *man/Collapse.Rd
f9a384e5533a86edaab9e4d93298ae04 *man/ConsSeq.Rd
07d55c4b764e3c456e49494e8885dce2 *man/CorrectGapsAndNs.Rd
b8d7c3d6e1860db610ecced8ee6c1681 *man/DBrule.Rd
990b91b9415210bb1cedf4de40520d0d *man/DNA.dist.Rd
ca05a96c883cf38b481d587318643745 *man/DSFT.Rd
4126d6aec8c5c65f422e81e1e1e9a363 *man/Diverge.Rd
792b1ff386cbb41ea162f09ff91da05a *man/DottedAlignment.Rd
57314df3656148b36e7e512886dd5d7d *man/FAD.Rd
f49311692a8a24dc408c531c1aaccd9e *man/FreqMat.Rd
75d4f969cbd82aa3d3d58e2183f63328 *man/GenerateVars.Rd
dcf4244b2edf6db1cda0a6b002f16794 *man/GenotypeStandards_A-H.fas.Rd
d39c1a6c862994cf3af7bb0073a6b3c3 *man/GetInfProfile.Rd
265495005917a5786ae2128081850267 *man/GetQSData.Rd
f226cc702348ebe1023bec08ebebc48c *man/GetRandomSeq.Rd
64d92938d766325fdbae70c42d9cc35f *man/GiniSimpson.Rd
7215c4fe2c505815fbf7b47f52b5d0d4 *man/HCq.Rd
5516baf930228daea0ea2383d5d54aaf *man/Hill.Rd
0f677cb2d9e516f0cfce4f69c0b6a069 *man/IntersectStrandHpls.Rd
7e7dba7b6b0ebeb470d1fe0e9ce64972 *man/MutationFreq.Rd
0af329d13ef28c4cc517735979e4832c *man/MutsTbl.Rd
2c780a56d9da6aba0482844937842c99 *man/NucleotideDiversity.Rd
50e6d144e8324fb94b926da40e7da3fd *man/PolyDist.Rd
47877cfc6455e464b2ee3747f2859217 *man/QSutils-package.Rd
be3d052f0893e1d91afc7e4b586a76aa *man/Rao.Rd
35f7eb9412d3441178020e51957219a2 *man/ReadAmplSeqs.Rd
30db596cfa57db1581829f4a49d3233d *man/Renyi.Rd
8e8c7840077b83a7b62dfb85eec5348d *man/ReportVariants.Rd
eb5cc252e87bb358604978005130f8f2 *man/SegSites.Rd
5a77d4ccf391a45e3cbaf7e8ef47f8cc *man/Shannon.Rd
a94d3e38f0899ff036b8ea4593737c21 *man/SortByMutations.Rd
a2e49f0d4e8c54dcb092da082d544c3e *man/SummaryMuts.Rd
1df88e5d3c555e5a750cf8490542e2a0 *man/TotalMutations.Rd
2f881bec189ebcbbbfc86f6d264a65a8 *man/Toy.GapsAndNs.fna.Rd
eb08c03d0e973d623f3405f33648db93 *man/ToyData_10_50_1000.fna.Rd
775c188a99be806302252043daf739b6 *man/ToyData_FWReads.fna.Rd
3223ad072baa708ca27be6efff5538d0 *man/ToyData_RVReads.fna.Rd
9f932b668da0b4905656641c9217272d *man/UniqueMutations.Rd
0da180a2d6a71314d5057e8996661325 *man/Unknown-Genotype.fna.Rd
cd701a283c5ed5e180e2219fbad42900 *man/fn.ab.Rd
c79b9065b44eeb0fb34414160b325382 *man/geom.series.Rd
2a7c78d963064db3bb72fa1e2946f9c3 *vignettes/QSUtils-Alignment.Rmd
72829e7bc2f0b9f5f2ca9ace828bddc2 *vignettes/QSutils-Diversity.Rmd
16548d64511cb89aeaded333bafbb585 *vignettes/QSutils-Simulation.Rmd
f0f570836037519858d960ee617daa32 *vignettes/alignment.bib
863887421d011679850d8274384820e9 *vignettes/diversity.bib
d672b1182ad03ace57e293ab1f5d57ed *vignettes/simulation.bib
