e76cc18ff564eea3f226b1e40729293a *DESCRIPTION
c8f801ebc222acf86a1a2fc2a5b20cf0 *NAMESPACE
3d241314a7577177e160312ff00500bc *NEWS.md
76d346a621bda8c929f16fc86c9788c8 *R/998.LGG150.R
f1b9e3fa70443f8993347b983be97291 *R/999.package.R
868f5e5025473eac415c8e24670eb1e6 *R/AllClasses.R
da5cff964d956d459100c2eb92ba0caa *R/AllGenerics.R
270d85c21aa0a11f12b1713d29d1b658 *R/QDNAseqCopyNumbers-accessors.R
6f4d6f1666ac4fe72cec14715b51d3e1 *R/QDNAseqReadCounts-accessors.R
905259e568f680b1fba354c5af5a6227 *R/QDNAseqSignals-accessors.R
293003393566c7349a891a3c4ddd7f8e *R/addPhenodata.R
cf2ca039e347a7d4d52023abe39b083a *R/applyFilters.R
d0fac812cb3e0f9c9d46db8d657865aa *R/binReadCounts.R
dfc80622f6eec8560e45acc2debd1742 *R/callBins.R
bd9d1409ad3faefebe55825352edf938 *R/compareToReference.R
e6d24ba5ad6a90baa0a3f02f80d2a204 *R/correctBins.R
066483156ac940feb3c4298fc8e4b7f1 *R/createBinAnnotations.R
db72d6b42e66a17b3a72f768dfceadcb *R/estimateCorrection.R
38dafee2c82f7f3c48f8290c15df99a3 *R/exportBins.R
f112d24a69d29e243c746c081f09db7d *R/getBinAnnotations.R
46672129ab1ca7038bc5813b72b5389a *R/highlightFilters.R
62c6bdb2d4ed57ae33bd7a49649d46de *R/logTransform.R
01fc17e07759dbd2b282df281d86dbd9 *R/makeCgh.R
b2117fec7266faf0d695f56d19391605 *R/normalizeBins.R
f179801dd6b4deb041672f739b3543b0 *R/normalizeSegmentedBins.R
c0929affebc348f7848913a003707a09 *R/plot-methods.R
cb33aa5c52329360efbfcd520ae7686f *R/poolRuns.R
995d27861652243dcf325824b14e8605 *R/sdDiffTrim.R
7afafbb495a01a55d5512f33339454ba *R/segmentBins.R
d50c9a41bdce9a6fad0f4a0fc562d41a *R/smoothOutlierBins.R
55552a74a40702fe3867ca50014d961b *R/utils.R
b1f69f074e46dc326ace057860da24fe *R/vmsg.R
c5e89da3e8d96fac641101549acfc989 *build/vignette.rds
f8f9f3407a9cc97abbe6a1b1939fa711 *data/LGG150.rda
c318f544d60c1305d0e014a2300fe87a *inst/CITATION
d13f6a69b04fd1bf7ab9521c86f52b22 *inst/WORDLIST
da9d19565cd258d1e344d7d1c43a1af6 *inst/doc/QDNAseq.R
1422075bd08c7b8274023a1e2cc8b18f *inst/doc/QDNAseq.Rnw
0d4697430bfb944d6e217bfce3e85bc5 *inst/doc/QDNAseq.pdf
eb7f8b4ffceb967a453cbe2876454491 *man/LGG150.Rd
52121fe03b81fb38011672ad17a3bd7f *man/QDNAseq-defunct.Rd
273f8144f19a3ef191779064b2acc9b9 *man/QDNAseq-package.Rd
2f1fad343e3b44617da64dd10f917d7c *man/QDNAseqCopyNumbers.Rd
c943d77cd0d5c44851a03ecc18c95f32 *man/QDNAseqReadCounts.Rd
c88f3af9c96f32e76b261b7a90a9ade2 *man/QDNAseqSignals.Rd
6076bab1f18915855d3385689a4e0193 *man/addPhenodata.Rd
79caf6ed4332b75297a28d1863c99390 *man/applyFilters.Rd
9373985198d821724f0485f461936144 *man/binReadCounts.Rd
626e1ed967e0d022125700840ab4459a *man/callBins.Rd
2b7e437cd55f07dc1464b82f8ecb5c81 *man/compareToReference.Rd
359c62c1a156e82d17e94865a751fc89 *man/correctBins.Rd
16bf6d753dd9553c9ad9dfbc4d21c8d7 *man/createBins.Rd
0c0dca77a596d1e3a3e17a071449f52f *man/estimateCorrection.Rd
e89c4a42cafcc5116e58466827e61837 *man/exportBins.Rd
30bbce45182070bbcd60c48fd83157ce *man/frequencyPlot.Rd
ee136200fe0f0b7a1c56575805b30d34 *man/getBinAnnotations.Rd
7e9507a7369be5386ccd6d03d87b6622 *man/highlightFilters.Rd
72ed5455184b1588aa8b391a97b0588c *man/isobarPlot.Rd
70dd93c8ebaf5107de1b9384afaa2c4c *man/makeCgh.Rd
9a7d46e41957fb206fc6b47641e0ab5d *man/noisePlot.Rd
915c2cce9adcc056afda5e18d3d2c9cf *man/normalizeBins.Rd
46c07fee8a6f36dbdde686752bf9b0d9 *man/normalizeSegmentedBins.Rd
2e1a9221562d34376c517a7ee1a904fa *man/plot.Rd
e70ab9ba2f2b359d28ce63562c1b1432 *man/poolRuns.Rd
9106721b9b3c3269238c24455869a3c4 *man/segmentBins.Rd
4e655ab7a312a288993f9fd4e75c8678 *man/smoothOutlierBins.Rd
e5032790b857c9982412a40e9e45286f *tests/QDNAseq,copyneutral.R
f3f525e851b5402cd39b2faf58264042 *tests/QDNAseq,gain-copyneutral-gain.R
0e994ff37dd2ef08b0c71924952e2265 *tests/QDNAseq,parallel-reproducibility.R
ef548651ac419502b3f34a352fc91f3e *tests/QDNAseq.R
04e61951b2ac15eb00f7068952be0d24 *tests/binReadCounts.R
0b41f9454d8b289c6c139f94e9cba9b8 *tests/poolRuns.R
1422075bd08c7b8274023a1e2cc8b18f *vignettes/QDNAseq.Rnw
