a1f07254750902d971429abebf6faade *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
06809cc48fb2c55bc93ef17704ab7fd2 *NAMESPACE
05df5bdee5a47440645c5a027bd94ee2 *NEWS.md
f2ba1e2f11ff6c7e2be2408320cea911 *PhosR.Rproj
5e37f11cefdd460b1f0d8b7f6d21b4d9 *R/Impute.R
b1171c12a8122dbfcdb505273ecc3b50 *R/PhosphoExperiment.R
22650f40f5dc71d626b3b016a38109ac *R/RUVs.R
8dfd6a23017d0f1ab443925b47c7a689 *R/Signalomes.R
5cc9242c3eedf83eacfc29dc3839a77a *R/data.R
0e8363ec5b9d8a9be42af3f2e684b2c7 *R/filter.R
b4d1068b9edaf050ec7057ea40048882 *R/getMotifFreq.R
ad83e6ac3c8dec06a9da74a827b68a69 *R/getSPS.R
b38cb27e0be3874fd3b8c4984c41e371 *R/kinaseSubstratePrediction.R
0702a60812b73ce18bfa19a7fc3d7ed4 *R/pathwayAnalysis.R
3e24c9788bdd0dd5019896a99739c076 *R/plotFunctions.R
2c4808be84a34f0a36b69bb7443bbae9 *R/plotQC.R
f221faae73d392a4c126eda3647fcdca *R/toolBox.R
c901aa7ad9ac9ba10e94f25d7ebb2539 *README.md
de714e4467f1c66ae1724fee16da3266 *_pkgdown.yml
7c4ec9cc6d8ad5ef57b2d59b6955e286 *build/vignette.rds
868e80d7b44cb0547d4e63964cf17604 *data/KinaseFamily.rda
5552be3ba2a7edd4575683b1ff06afee *data/KinaseMotifs.rda
dda6797e23ce30091cc77664daa65cb6 *data/PhosphoSitePlus.rda
5f0d16b39077680ae4630248acbc8576 *data/SEGs.rda
2ef91a2bdaaccd080bcf0c6556633224 *data/SPSs.rda
1f606257a323ef63a72a21748ba8fa2c *data/datalist
4f8849749fba856334ed587710656b2b *data/phospho.cells.Ins.pe.rda
992e4c636a3c3b0df16b66d6561bf08b *data/phospho.cells.Ins.sample.rda
9780c73e7c8ec85fcc32a0e96ea9bf00 *data/phospho.liver.Ins.TC.ratio.RUV.pe.RData
becf40ecf7d8a43ea3682af9239f4690 *data/phospho_L6_ratio.RData
de4438bcf391c0895b0c3ea545a6a871 *data/phospho_L6_ratio_pe.rda
7e890bb3a91c3cbb658c8379e472b8f2 *data/phospho_liverInsTC_RUV_sample.rda
d203236203d702c55103255b570d3fc4 *inst/CITATION
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f22b0956eb0cd7261dfed90c23ba9b89 *inst/doc/PhosR.Rmd
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f198f4a1834d58952e3ddec89dce9b82 *man/KinaseFamily.Rd
21e6ac678ce3e5801ce997ef46adb952 *man/PhosphoExperiment-methods.Rd
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6fe1685bd76f1df2024bb8f9c1ffc66d *man/PhosphoSite.mouse.Rd
6fc1206af4354fa358787f68b91b215d *man/PhosphoSite.rat.Rd
6017950d0c38378825c4ae5ded680385 *man/RUVphospho.Rd
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3daf4a7b10e2fb3712d1610a3a96fe74 *man/hSEGs.Rd
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7d22b53e8901d6c77bc4dcb5579df568 *man/kinaseSubstratePred.Rd
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17be5a4ae5cde47d256df20b42a524b6 *man/kinaseSubstrateScore.Rd
65330a08bd31632b6e7f2a37c4add1b1 *man/mIntersect.Rd
9c0bfe0dc796be02d3850effc6f2f725 *man/mSEGs.Rd
6c164da8d95fbcc1c3cc830550a94ab0 *man/matANOVA.Rd
9d7a880bc2fd35d6d9ade089685a8ee4 *man/meanAbundance.Rd
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d1c29703faa7e193b8636b195eb04637 *man/minmax.Rd
788903f237a603bb315248e9111df1a8 *man/motif.human.list.Rd
a46f71582d050c416c5df73ebdc0bb38 *man/motif.mouse.list.Rd
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a11e45d4964b03717d282707daad9339 *man/pathwayOverrepresent.Rd
a3b67ad1d6a3103ee6268f270157b32d *man/pathwayRankBasedEnrichment.Rd
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17de8d4f6f7b9db9ee2cf67cfac4523f *man/phospho.L6.ratio.Rd
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251f1b54e047802cfdcfaab11e062e56 *man/phospho.cells.Ins.Rd
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28338aa80216941a49e0d3be8132b53f *man/plotKinaseNetwork.Rd
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952823e7d55ad54772f1ca7e0ab4e0e7 *man/plotSignalomeMap.Rd
8610a9242391f7f2ef0c464a65f3779d *man/ptImpute.Rd
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9205bfd1def3a6e8f6ae801ba9cbff31 *man/selectGrps.Rd
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19d292da485fe784dbc72ebc50e21b45 *man/siteAnnotate.Rd
0aafb1cf2200b1836a4040bd24a8a818 *man/standardise.Rd
8345bfca2f9730706db043f03354f401 *man/tImpute.Rd
8ca727eb46de0ed29606320fed41448c *tests/testthat.R
639002cd3ef2fe66721719a98876facf *tests/testthat/test-RUVs.R
a20d9d954ed36591370c3702eaa05909 *tests/testthat/test-filter.R
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e687838683eb509ec450bc72bc2d03ee *tests/testthat/test-pathwayAnalysis.R
1cf90fb7d786bc91c505966d87709e37 *tests/testthat/test-plotQC.R
f22b0956eb0cd7261dfed90c23ba9b89 *vignettes/PhosR.Rmd
698fdbba1539a6f2ef243f18215083db *vignettes/web/PhosR_STAR_protocols.html
28a8fc3c61b491604c6668f950690ad6 *vignettes/web/PhosR_STAR_protocols2.Rmd
9fc0ab7cdf17d4db997b480901d19cb7 *vignettes/web/batch_correction.Rmd
7c8b1e1508adb8eed9e1f2e7455210bd *vignettes/web/imputation.Rmd
72145ad412734d1cbf6227fcb9eb861e *vignettes/web/pathway_analysis.Rmd
5ba1009766c8d61f7b90121aac7eed6b *vignettes/web/signalomes.Rmd
32da514fd4dd33732f31213c05e3fcf1 *vignettes/web/site_gene_analysis.Rmd
