2501c349a2354d40122ad603515bfa5c *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
1bf2d8a5c9e82425d1fc9383fa498770 *NAMESPACE
63dec42b50b08528225b61e79e034234 *NEWS.md
45650b6f64f14cf47d1ab396574b7326 *R/NanoTube.R
5a2a24fe922194e99b6883d8398eb4ae *R/deVolcano.R
49831579459580e745da94f69ab33480 *R/fgseaPostprocessing.R
75dcfdce433552533f608971e1878514 *R/fgseaPostprocessingXLSX.R
dc2fc1b66ec29f6798f6329281fd8183 *R/fgseaToLEdge.R
0656124ff9b36b99aaee6da41c22c7d5 *R/gm_mean.R
bc171a24b7d67cc3b0b6abfa8380e67d *R/groupFGSEA.R
ab68e483e65f5ff8e0ebcfb3e59ca7ac *R/groupedGSEAtoStackedReport.R
d1b41f7fa0c96d22766fafae0b23c916 *R/limmaToFGSEA.R
4053749b72a64456f4ffadd79e8d29b9 *R/makeDiffExprFile.R
1b69a5cfdc8e0fe0c277bb081e7f9240 *R/makeFGSEAmasterTable.R
c7f138a0cd3244e14d493791f394d2c3 *R/makeNanoStringSetFromEset.R
251aa4093aab62a6746ac812d6e3f20e *R/nanostringPCA.R
ae1d69748d6e881506a9023ac0d8c50b *R/negativeQC.R
a8a1486f4f179b06436efdbd650b1891 *R/normalize_housekeeping.R
4aeb34c15622e03ab82b33d6406f2d08 *R/normalize_pos_controls.R
84cc24ecf47e1f024ae68a8083fac3f6 *R/nsdiffToFGSEA.R
165dc579c636cd542c7f4ef465d72440 *R/positiveQC.R
fcf18e33c5995cb750728ddb7ac4ca9f *R/processNanostringData.R
ec2effdbff4d558310b9f460ce80779f *R/read_cpdb_sourceDBs.R
1f80698d4891717ba7ef145c4e43de51 *R/read_cpdb_tab.R
45925b39540e3e9e015d7f166f2bfe13 *R/read_merge_rcc.R
b37d1cd2dc077c31af7a757912516621 *R/read_rcc.R
a3f5091deaa2f5fff8a4690ee3bee5e8 *R/read_sampleData.R
d3918a46f2f98788226dc75a3a38e22b *R/remove_background.R
a7206a637e6d4aefdd95b2a937d499f5 *R/runLimmaAnalysis.R
0438db254851b92af6332eb20a1cb2d3 *R/untar_dirs.R
2f8470db476371f11baafab6fe027eb5 *R/unzip_dirs.R
fd8cc30e155f33c097e55b001e2ede0a *README.md
74ffec27f7a4f6c1a7a219f44d1c6d0a *build/vignette.rds
04cce1deaf2b84085a5bf8d0ab37c4ee *data/ExamplePathways.rda
4ff65a6f45c754a8b8dcc168c19d28c6 *data/ExampleResults.rda
600be82044db9f7a83ad6e4f3c974ea3 *inst/CITATION
658d7693299c3b82cf453f15d13afb08 *inst/doc/NanoTube.R
8bcc62fdc4245d6686c774d606f68c0c *inst/doc/NanoTube.Rmd
b1135314f92abaa00d429b58408565d8 *inst/doc/NanoTube.html
3ab00d9e460bf2e5d797951cf7158d6b *inst/extdata/GSE117751_RAW/GSM3308226_20160715_5609WV-C.RCC
ed7aabd8e4c82405e38771a9a161b87e *inst/extdata/GSE117751_RAW/GSM3308227_20170504_6090AA-A2.RCC
b6684a31e5caf176398d47d8ff61870d *inst/extdata/GSE117751_RAW/GSM3308228_20170504_6121PF-A2.RCC
057caaf3e1ac311e8f0b6d0c323dcfdb *inst/extdata/GSE117751_RAW/GSM3308229_20170504_5993KP-A2.RCC
d48a076a45de050666f88b9650f82235 *inst/extdata/GSE117751_RAW/GSM3308230_20170504_6536VE-A2.RCC
5e4c8d6e566c7d826b7b9a07a2261d86 *inst/extdata/GSE117751_RAW/GSM3308231_20170504_6568NC-A2.RCC
7de8615d79dea8575ac04479faa2ddbf *inst/extdata/GSE117751_RAW/GSM3308232_20170504_6612MK-A2.RCC
f9882970107dbf77c14b1780f5ed6634 *inst/extdata/GSE117751_RAW/GSM3308233_20170504_6636KS-A2.RCC
25e4d0eadc0f615c32489fa38b85ae2c *inst/extdata/GSE117751_RAW/GSM3308234_20170504_6204CL-A2.RCC
ee19e180bc65b5fec0609672afb45868 *inst/extdata/GSE117751_RAW/GSM3308235_20161006_6779BL-B.RCC
48de9638290d87a3d297f76978a30791 *inst/extdata/GSE117751_RAW/GSM3308236_20161006_4988CH-A.RCC
02337ce9472859bdca26063b3d7a5bfd *inst/extdata/GSE117751_RAW/GSM3308237_20160329_8017DU-A.RCC
5471ad8d1f5642481df21a59dc3e6338 *inst/extdata/GSE117751_RAW/GSM3308238_20160715_9154ET-A.RCC
e7f7c417ce9fb0d9ace0cfb7e7972056 *inst/extdata/GSE117751_RAW/GSM3308239_20160715_9164SM-A.RCC
e7c767cdd162176ec148e5b819ea4bbb *inst/extdata/GSE117751_RAW/GSM3308240_20161006_3947MC-A.RCC
73b26a022ae7b72b6db6c8d2566fae53 *inst/extdata/GSE117751_RAW/GSM3308241_20160629_402ER-A.RCC
1d31a3ce7546ebccdbd8b59e6eee48b7 *inst/extdata/GSE117751_RAW/GSM3308242_20160629_991KH-A.RCC
cb477e6fbde64e8ea92cc57d9925f8e4 *inst/extdata/GSE117751_RAW/GSM3308243_20160715_440JT-B.RCC
e48c99e6ce327bd3e60e9ca107bf6518 *inst/extdata/GSE117751_RAW/GSM3308244_20160629_5092AD-A.RCC
ac0af67e12fed6bc7780f40f51d9d25a *inst/extdata/GSE117751_RAW/GSM3308245_20170504_8037AM-A3.RCC
067fbd4dc272d0af213e1a52cda4c3c6 *inst/extdata/GSE117751_RAW/GSM3308246_20170911_3905SW-A.RCC
6dd7d09d0ba80d42b9c561335fd640fa *inst/extdata/GSE117751_RAW/GSM3308247_20160629_4231DK-A.RCC
7311de1536a5ba7849769d090c5ce7fe *inst/extdata/GSE117751_RAW/GSM3308248_20160628_6372ML-A.RCC
beda5520415a7197d927473e377ee0ec *inst/extdata/GSE117751_RAW/GSM3308249_20170911_5665PB-A.RCC
ce62248189613ea64426e029ce889672 *inst/extdata/GSE117751_RAW/GSM3308250_20170911_9134LH-B.RCC
acdbf55a648984243fbe2d6917883b98 *inst/extdata/GSE117751_RAW/GSM3308251_20160715_6034RN-A.RCC
64c46541e2f83b397bca2af31113299c *inst/extdata/GSE117751_RAW/GSM3308252_20161006_9219RD-A.RCC
3ce07eb946bd8175ace0f53bce7d6dc5 *inst/extdata/GSE117751_RAW/GSM3308253_20161005_2068AP-A.RCC
34e6b27651b4c0dad88595b32796e833 *inst/extdata/GSE117751_RAW/GSM3308254_20170504_5885SL-D2.RCC
0eb317adc73537f0eca9f0d652c08106 *inst/extdata/GSE117751_RAW/GSM3308255_20170504_9051LS-A3.RCC
8ba2abeea927fdcf2be9133db4a2d1b0 *inst/extdata/GSE117751_RAW/GSM3308256_20160628_100KB-A2.RCC
7f0dd271cf5a2a7ae15c5d2eafc86d62 *inst/extdata/GSE117751_RAW/GSM3308257_20160628_9149DB-A.RCC
f3e2d5874f1ccb8ff59d97517271ed6a *inst/extdata/GSE117751_RAW/GSM3308258_20160628_9147BM-A.RCC
88fe9e84c26d255408e4865a4a140fe3 *inst/extdata/GSE117751_RAW/GSM3308259_20160628_9148CW-A.RCC
2917a93868141608f9577f24c680265e *inst/extdata/GSE117751_RAW/GSM3308260_20161005_9281JM-A.RCC
a809e789fc334fbb9f49ef0fed64d450 *inst/extdata/GSE117751_RAW/GSM3308261_20161005_133BK-A.RCC
69ca36cf42e763468336444faec630a3 *inst/extdata/GSE117751_RAW/GSM3308262_20161005_134CD-A.RCC
87815bb4328fcebe5b0bb6d08dbe033f *inst/extdata/GSE117751_RAW/GSM3308263_20170911_9653RA-A.RCC
556aed8efc856851da345a0518db7e7b *inst/extdata/GSE117751_RAW/GSM3308264_20170911_9655RK-A.RCC
8b472180778544087a8ec8d106d317ae *inst/extdata/GSE117751_RAW/GSM3308265_20170911_9656CW-A.RCC
b7f2741b1fda4dde589138397601e99a *inst/extdata/GSE117751_RAW/GSM3308266_20170911_9654NL-A.RCC
128d77b5b73c632e6f07aebaed9dceed *inst/extdata/GSE117751_RAW/GSM3308267_20170911_9660TM-A.RCC
dfb950ba43e82664272a104f8e3a4e9a *inst/extdata/GSE117751_design_matrix.csv
5a368d6b99def0cc498a596bab63fd8b *inst/extdata/GSE117751_expression_matrix.csv
54166bb158684d2de412496117f001b5 *inst/extdata/GSE117751_sample_data.csv
5b7800644186a773a14edb5543f889bd *inst/extdata/GSE117751_sample_data_replicates.csv
8a582d31ccd2dff19ba0d4bd5a919212 *inst/extdata/GSE117751_series_matrix.txt
112f739cb3a94d54c222434a2cbfccc3 *man/ExamplePathways.Rd
f8a1bbf5d0d9b634436167bf72a24f4f *man/ExampleResults.Rd
2f4bbfb900e8b16fa66f4022559deee5 *man/NanoTube.Rd
d3a1ee1f1db6a307dbf3a7d11a096a8b *man/deVolcano.Rd
97551019e70649cc71fc8bc5bf3fe1af *man/fgseaPostprocessing.Rd
cebdd2ebd3f3239f078bb7c344747229 *man/fgseaPostprocessingXLSX.Rd
9f8d24007aa0f61cc9f688f4e54e6eda *man/fgseaToLEdge.Rd
21d557300bcc2adf34054768c061f312 *man/gm_mean.Rd
04ba583c03314a763b872c4d4bec24de *man/groupFGSEA.Rd
b9c061e05270a297002d5bd93898aaba *man/groupedGSEAtoStackedReport.Rd
4a9858c410c680bb62088f08ef076a6e *man/limmaToFGSEA.Rd
dccf63cea363dc564db57b474d190c46 *man/makeDiffExprFile.Rd
191f517df92eabec92f8285bb107f909 *man/makeFGSEAmasterTable.Rd
38ee23a73d95da5c9b56ebbdcf10f681 *man/makeNanoStringSetFromEset.Rd
3c7709918d50527f0468e588408e9e00 *man/nanostringPCA.Rd
24d28c7508721095b3b3192a3dc486d0 *man/negativeQC.Rd
8b38c6cf9ba0cbe9709ffc98da21db8e *man/normalize_housekeeping.Rd
f70ae048ac1ffd473301552f78247296 *man/normalize_pos_controls.Rd
09a4eb7cad1184e02395e577c9920341 *man/nsdiffToFGSEA.Rd
b0535cf12681af6a5f635fa916bb9207 *man/positiveQC.Rd
6848be2c45316d880a592527751465ef *man/processNanostringData.Rd
0b18c17517c1c09a464fd110c49c70da *man/read_cpdb_sourceDBs.Rd
fc0a4cdd2f74fd6379cbee82a371a2f5 *man/read_cpdb_tab.Rd
8dd79470b1888ed81cfaf3be66a1b0f8 *man/read_merge_rcc.Rd
7ead1462e7e0aa8a619da946e43839ed *man/read_rcc.Rd
95bf235eb2d28d23b4a5242362c80601 *man/read_sampleData.Rd
d19b2e5bfc1408855e5e17dc6d0e4209 *man/remove_background.Rd
9de6b40793e52aa08867562709bd3ac2 *man/runLimmaAnalysis.Rd
be933692f209d518dd39a27f42e946a6 *man/untar_dirs.Rd
c747588300557728764a09080037c586 *man/unzip_dirs.Rd
d1baa45e88e67591af3db343cf76bc8a *tests/testthat.R
374f97ba2a48deb40d88091116f843fa *tests/testthat/test-gm_mean.R
8bcc62fdc4245d6686c774d606f68c0c *vignettes/NanoTube.Rmd
caa4672be0d0b188ee90b2d0fdfece5c *vignettes/NanoTube.bib
