cc446ef1a4316788c0c66dfc2f4e400d *DESCRIPTION
0d0aa4d7119fa7b2c2e1aec0f2c8e6b9 *INSTALL
861f4ba99608a72c0f32af45ad1c2248 *NAMESPACE
1be7c384c4f995f0d453b52b2db37843 *NEWS.md
a713c8fdab47004e0e62f3a924626436 *R/DMA.R
d710eb3e572ff80821fbea13670bc00c *R/EpiMix_getInfiniumAnnotation.R
16eaede9827fc4905ffb575cca54be76 *R/FEA.R
1af896a0183ce1e1df16ddc4c87ff13a *R/GLS.R
fb82bac181a2af5ebbeb91ff24212349 *R/GMA.R
40c15552bcecdab18758a5f266372fcc *R/GRN.R
63a44d97a5016615098738425562aac7 *R/GSEA.R
5065a1167b300797cca1dd863c65022a *R/LPA.R
75747cec7b823b53ca7e320689353d34 *R/LiftMAF.R
79d2cccf13f781b2573b532795de408c *R/MAFtoCscape.R
9a0a0853b64d7da8bf460a0f1e49f752 *R/PRA.R
9714fa18d88089a19cc5a35df3ff6e27 *R/PRAtoTibble.R
72b192f522836360f63f730b167ddd59 *R/Rdata.R
56caaab36462e806267b22982ef8e4d5 *R/RunCscape_somatic.R
2619f8a9be33ed1541166fbdf416b65b *R/TFinfluence.R
aac0fc9fe82ee8832fc8c704ca95873a *R/URA.R
4243d872da0b08d6625cd389043dfc65 *R/confidence.R
e6d1efeff8bc81e512e24454330abc9d *R/getDataGEO.R
7f4e5e66f72f2371e4cdaebf9d35f702 *R/loadMAVISp.R
88af05941a0a67fbda019a99ce21fb48 *R/moonlight.R
249e95dc3db89e40f0fb93df278a47fc *R/plotCircos.R
fd6af714aa89f77d705e71992b0fffd8 *R/plotDMA.R
938784cc5194dc6b5bf60210aa542f33 *R/plotFEA.R
7a5ad97de4a5aa89d0a7e35efabf8175 *R/plotGMA.R
939db0e7aff258a324dee96855a5bca3 *R/plotHeatmap.R
e1c6e318ccd411119870d1d483558367 *R/plotMetExp.R
7f43b0469e738e27c0f07fe3abf4271a *R/plotMoonlight.R
73e282502d0c42d4e7e040ef8d7a1027 *R/plotMoonlightMet.R
32116eae8c034707f849ffddea357ccf *R/plotNetworkHive.R
cda26d96976e1492813e8f4ec06c490a *R/plotURA.R
e8921508c01a8332f4217e85c278262f *R/tabix_func.R
fb7ca25807a8d1f3c0632d8faa90bd3b *README.md
cb18b655abeecd26d110ceec02a7f72c *build/vignette.rds
71be9486fdc278c3d2683e4e73b547ef *data/DEG_Methylation_Annotations.rda
7cbed0fcc96a08d5256a94ef49f0aae9 *data/DEG_Mutations_Annotations.rda
8496dca3f38148b199c9e41479469693 *data/DEGsmatrix.rda
af3d484dbd96c3b8c8da618d6209be34 *data/DiseaseList.rda
d2bbd9a91e243ffe7b0e99c973d2b1c4 *data/EAGenes.rda
12922ae85803af8e6fe6e273dff20f91 *data/EncodePromoters.rda
0dcf6bd9209a8d70bee6eb7f57b7a199 *data/EpiMix_Results_Regular.rda
9c65fb9bec4f4e22eef724f86fd41b78 *data/GEO_TCGAtab.rda
00c2f69a4236406a3849c9394997fd2f *data/LOC_protein.rda
4eb2177da810d7ea758c6b1316705bf9 *data/LOC_transcription.rda
9b2830f7877a3f5dec9a3837db106870 *data/LOC_translation.rda
7ec36319e4013dfd62938d923adb8ae6 *data/LUAD_sample_anno.rda
1c87bdc704527f0a9e3efcfb00712ee3 *data/MetEvidenceDriver.rda
da641ac62a38b9c277da044de3a03851 *data/NCG.rda
fd1e339832b0ab7f29457ad4613c5ace *data/Oncogenic_mediators_methylation_summary.rda
24c0a8f3942999e98d2611ef9bf3b50e *data/Oncogenic_mediators_mutation_summary.rda
ba6357afd65927817b9679066338e494 *data/cscape_somatic_output.rda
2357283a87051a2a1370c953c14f1c3c *data/dataDMA.rda
4c872f9a3c3d30bb839194b0b4612744 *data/dataFEA.rda
42b00ca9b715cb4fcfa62219f89d7f5a *data/dataFilt.rda
96a279c615e13ad890d5a386a50c2e74 *data/dataGLS.rda
cc5a226ba9c257e15e6d87d0fbfcdc19 *data/dataGMA.rda
0dae0cee6ea80d32289224246c433cbb *data/dataGRN.rda
0035014fcfae44ea5cc3e587da627f29 *data/dataGRN_no_noise.rda
33e0c2902fefc9e433e13df101aae80b *data/dataMAF.rda
14213ae93edf56f74a6b35e4a64c7d77 *data/dataMAVISp.rda
82fff47c1fca9ef8489422cc15a7603f *data/dataMethyl.rda
d7660d616251e8a2eaa4f5be5114fb5e *data/dataPRA.rda
1891ccd0c6d4bc08723f9830f4c314ea *data/dataTRRUST.rda
31a0a9d567274f6ecbe9a6b531eaa6d1 *data/dataURA.rda
bc75aa7fd69c740eff29017b2e6c7bce *data/dataURA_plot.rda
227e7e5d61c1979c0187ac17492a48f5 *data/datalist
3bdd7f47841c19ee77010974baa28da3 *data/knownDriverGenes.rda
12b9964deca2abd3eda37f5c63dc76ee *data/listMoonlight.rda
8cca17338512d5e3806a342c6477ad73 *data/tabGrowBlock.rda
d603a0f60a541463ab88deacd8cfb6a7 *inst/CITATION
32fd1efeb759e2463dc8556e7487e29b *inst/doc/Moonlight2R.R
69b4f66b5c9ea8ca492c82329f5ac49d *inst/doc/Moonlight2R.Rmd
ee691e516498ea31cbd5756c7c3bc648 *inst/doc/Moonlight2R.html
af2c95bd6aa8580f2da34502fa876042 *inst/extdata/mavisp_db/dataset_info.csv
ff52a7bf332fb772307357a9c655b767 *inst/extdata/mavisp_db/ensemble_mode/dataset_tables/TP53-ensemble_mode.csv
b4daabc3e1ce65948cdc7c2f7f95360f *inst/extdata/mavisp_db/simple_mode/dataset_tables/RUNX1-simple_mode.csv
d885ee9f3116eba3fd8fd8c678368304 *inst/extdata/mavisp_db/simple_mode/dataset_tables/TP53-simple_mode.csv
35a91822fff3fac0163cda7bd4210ac5 *man/DEG_Methylation_Annotations.Rd
b6a917d2dcce4ef032d9e63e0ff21ee2 *man/DEG_Mutations_Annotations.Rd
e854598f36c8f4810d2023975a433013 *man/DEGsmatrix.Rd
96d4c54b3db8e5ddfb09220e8ecb632c *man/DMA.Rd
1745cb75007f0e5b8734c8d81205a494 *man/DiseaseList.Rd
832df2eeaa3fb0c5962c508402acea24 *man/EAGenes.Rd
c64a80640ccd8310ba4c6e4e3c86f546 *man/EncodePromoters.Rd
26c8598d593c7c0906da66ce939fd5f6 *man/EpiMix_Results_Regular.Rd
3632a7e3283df7b73bc6271522a84ff3 *man/EpiMix_getInfiniumAnnotation.Rd
928c6f26444a82d9d81284652eb2dad5 *man/FEA.Rd
587eadfd0975c3eda3ab66a0196fac48 *man/GEO_TCGAtab.Rd
9a8d59a8158c612f3391d9e89200af92 *man/GLS.Rd
906e7b92a386747ac9b57cafae0de207 *man/GMA.Rd
65d5415150a07841fadf89229db6c344 *man/GRN.Rd
6c77709e162c311389d564d8b1ded378 *man/GSEA.Rd
ee15f4cb87675c0012a62d8e295b0d67 *man/LOC_protein.Rd
966e5158152fe18141e36e3e62424454 *man/LOC_transcription.Rd
8544cdb367d900d27f5c3909224e9eb0 *man/LOC_translation.Rd
1961a3b419f8aacf7d7f4a0b7b9b2865 *man/LPA.Rd
3b76c88b429e74573f536ab2e3456217 *man/LUAD_sample_anno.Rd
23f457102a9d6f35db3b7d9bb79c052c *man/LiftMAF.Rd
53c3e3a8ad4e8c4952229567c715cd9f *man/MAFtoCscape.Rd
a4c2901908ea46b5fa74d62e341abf10 *man/MetEvidenceDriver.Rd
8fc354510dbcfa92db59deacb84a5c0a *man/NCG.Rd
7cee0c1e4286d5fdebf698c399978841 *man/Oncogenic_mediators_methylation_summary.Rd
3cd12b5c5b8f4686197856cf75f6332a *man/Oncogenic_mediators_mutation_summary.Rd
af289d5771adf2c120799b7b5627e96c *man/PRA.Rd
add0035fb0442c7c0561a2add26cae69 *man/PRAtoTibble.Rd
c43ae32629a9d7b3465d3a9040abbbc5 *man/RunCscape_somatic.Rd
091f7eccfdc68c26e5ce9277e6b890c6 *man/TFinfluence.Rd
c8c34418b08878d43540d617a81ddf1b *man/URA.Rd
69dbae697407be5e92aeef6a7d6d2f9a *man/confidence.Rd
a653ad749d50ca58a1d37d6276c674c5 *man/cscape_somatic_output.Rd
83de077f3c938a9ceb1a3ab6ce9193fc *man/dataDMA.Rd
a6de9487163283966f62c21a6889efc1 *man/dataFEA.Rd
c81c3792d50a978511662d966aa90250 *man/dataFilt.Rd
43ea896f132f20a7c35a0510d20a56bd *man/dataGLS.Rd
c0b8af2a03416f4848a266dfbaaee72b *man/dataGMA.Rd
bc91257f9305e30c6de0f2aa2d9ced81 *man/dataGRN.Rd
d2f417a68cfd5961e80ca5ed3cbef673 *man/dataGRN_no_noise.Rd
86fcde9139bb3345b9235a8e5e906f6d *man/dataMAF.Rd
4bc8ee47492cbf86db3f10f18acba561 *man/dataMAVISp.Rd
9330e83eedd5df03f0413362961d47f0 *man/dataMethyl.Rd
9c14b37e47a54f74e30f545d08de33f7 *man/dataPRA.Rd
28f3bcea08377a7f83599d7e797f5b18 *man/dataURA.Rd
812cde995905da0f4b41e343169224d7 *man/dataURA_plot.Rd
e5e546b979f64555cd590b5aa32d6b59 *man/getDataGEO.Rd
392cd021095829cdb25d26e1c60fbad1 *man/knownDriverGenes.Rd
e4f8d15ef08a85a2b6f05a73290d7951 *man/listMoonlight.Rd
0e34f6e1dd005aae89ff181d9f839228 *man/loadMAVISp.Rd
4553c6a460996d73e150f0216e0ba82d *man/moonlight.Rd
fd5c99049840f0ed512a908e5e54d75e *man/plotCircos.Rd
655d4f065bd90813e293e91e4687b51a *man/plotDMA.Rd
39486eb0d4a75b04a32075d94928415d *man/plotFEA.Rd
3ac0d6f9f78deaf3ee939923e138e773 *man/plotGMA.Rd
b4c8ed7cb431f308d5542b0a58b21b16 *man/plotHeatmap.Rd
d0ddb4f1f45ee74dff1ba15171ea2ee0 *man/plotMetExp.Rd
3abc1dd032b499eb6be658a81df22fca *man/plotMoonlight.Rd
4aa04e2bcd2051d4d4d6d3813c07d5ec *man/plotMoonlightMet.Rd
2f5956908b3be1abafef65f18497b233 *man/plotNetworkHive.Rd
6c09b41ed9814de91980afb208c11d47 *man/plotURA.Rd
e6b4eed6d2bc1f64a2b23ac72421f466 *man/tabGrowBlock.Rd
45680ed77ec930a3cac43eff70ad8696 *man/tabix_func.Rd
2bced048a98c001de7dd7e94286a98f4 *tests/testthat.R
ba6357afd65927817b9679066338e494 *tests/testthat/cscape_somatic_output.rda
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8ec32e6749917c12f8bc0c4c083f7116 *tests/testthat/test-GMA.R
2c73032ab7b076ec9a7f96812791728c *tests/testthat/test-GRN.R
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90d8c41bb46e1c7296f6121ab0be9335 *tests/testthat/test-loadMAVISp.R
dbf69df0b606a824a6ab176c713396a6 *vignettes/FEAplot.gif
69b4f66b5c9ea8ca492c82329f5ac49d *vignettes/Moonlight2R.Rmd
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683f48f20e55f830e0c41aaf79c7912b *vignettes/heatmap_complete.gif
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eae1863b2665850466732ac286563ac9 *vignettes/moonlight_heatmap_met.gif
7ae3d1390dfc539178b0fd1506b98cc4 *vignettes/plotMetExp.png
