3845e6114dc231004da436b94c6ae76d *DESCRIPTION
2045fb4f957668da7b05f51d2a80d1f0 *NAMESPACE
557124188a2cbeea75af7470679ca1c9 *NEWS
945872f11876285434d00f10bf8ebf7d *R/MIRA.R
7026013344e6209ad2890b0c433e03e8 *R/binning_aggregation.R
f23b84f9da51dc8490b4784456b7016f *R/data.R
377c30355de3d5b53c1a4e5595541256 *R/plotting.R
2293bf589991743ac61fd0e662217714 *R/utility.R
dd154c894894ffe53a9c89b333180412 *README.md
0b59115c5dfb9dc38b35ff653c7d52cb *_pkgdown.yaml
5f044cf64f7e5dbcd1a5543ac867c7d5 *build/vignette.rds
11fe15f9f698f036cb4e787d4876391e *data/bigBinDT1.RData
c2d7dc3940ab009c3d6760a5be43c06b *data/bigBinDT2.RData
3403d9498ed57b9a1d9c4597b63de23c *data/datalist
31b09a36ca15a19fb6740a889da636f4 *data/exampleAnnoDT1.RData
cda8633cfa409bd9634fa185f17dcdaa *data/exampleAnnoDT2.RData
51ea1468fd70e786bdb63d358e821219 *data/exampleBSDT.RData
8c679d31cc54d2c932e13cb76f263b24 *data/exampleBSseqObj.RData
4cebb3477553f6f932f95f53ce3f0e67 *data/exampleBins.RData
8dee3739c8c1297bfb029281189f5cf7 *data/exampleRegionSet.RData
385ed605af25b3d437c35aa4a8d99a53 *inst/CITATION
dae6ce0ae177a7176789a37d97beedde *inst/doc/BiologicalApplication.R
8425416fbd9a835e9dbdc5b28e868df2 *inst/doc/BiologicalApplication.Rmd
ca6dfdc3d8906536c8a66883f70b6e49 *inst/doc/BiologicalApplication.html
57c95932206d6cc573c8bd61c4d5fca1 *inst/doc/GettingStarted.R
dc8158ebaf0d85955ccf090de6b7cba2 *inst/doc/GettingStarted.Rmd
bc45f3908e162efcc4c1e3513f05df75 *inst/doc/GettingStarted.html
00048c15a9393c34169a3adbca5ad103 *inst/extdata/exampleAnnoDT2.txt
390f27798b55c5a3ab5e7fb98ea24f3c *inst/extdata/shortRRBS.bed
7a77075bbd5d9771daaecd4556d7f05f *man/BSBinAggregate.Rd
41e02f0ea5d2ca3f6c3d92fe9a48d500 *man/BSreadBiSeq.Rd
934c4a1133ef5bce6bcf027ca8ff2a3a *man/MIRA.Rd
b8fd41b4053dfab5770a63f3d7671d94 *man/SummarizedExperimentToDataTable.Rd
6f575ecb4ece091dada9fb08a353b96e *man/addMethPropCol.Rd
b4eaba3dcd1bcf9e1b46182ecb021de1 *man/aggregateMethyl.Rd
31e65b09897073e15119cf7b8fb2ab31 *man/bigBinDT1.Rd
def37f1393374595322b528edaa7be47 *man/bigBinDT2.Rd
4f916f43e996db35636132b5d8128a8c *man/binRegion.Rd
75b20ccfc6cff4bd443085803550a853 *man/bsseqToDataTable.Rd
67ce101bdcb98ba3596fb4e0104f275a *man/calcMIRAScore.Rd
f9b8994f7e0cb11b069df06c3d958265 *man/exampleAnnoDT1.Rd
7157e1f78e4df24b4f863f20c009aecc *man/exampleAnnoDT2.Rd
8746367d390f1b4c3b8ff01db5222501 *man/exampleBSDT.Rd
aac595f23b990a102fac7feae9a3ae35 *man/exampleBSseqObj.Rd
dd8f36addcebf3b34f19af6c57a78983 *man/exampleBins.Rd
3ada33ad51df587bc80e23a7bda8a2f2 *man/exampleRegionSet.Rd
d177a047976b7a2e010455c6abaee8fc *man/plotMIRAProfiles.Rd
16b20011140ebbf8c33bfafaa3a90e63 *man/plotMIRAScores.Rd
2fef6a5f66c5017444d075a49ca24d2a *man/rbindNamedList.Rd
4e68f9b6de4a035d6386e5889a23b018 *tests/testthat.R
7aa3ada61d64447b3f66b17535d3bdad *tests/testthat/test_all.R
8425416fbd9a835e9dbdc5b28e868df2 *vignettes/BiologicalApplication.Rmd
dc8158ebaf0d85955ccf090de6b7cba2 *vignettes/GettingStarted.Rmd
