e34a5087fe0f1f1f17fb0610f638c93b *DESCRIPTION
7e639fcc17f3a725ce7f8c0011ac7379 *LICENSE
beec66914a7848de36605cf05c7e807d *NAMESPACE
25b0661a060e583891828140bfc9fef7 *NEWS
ec1cedc70ac4e1f44d2ab6d94ac9663a *R/Cournac_normalization.R
6dd36660c851fb7cd1868a3f00697175 *R/HMEC.chr10.R
29b98505de6e4cd364712ccec251cd21 *R/HMEC.chr22.R
5afdcf7d700427e81c21a9982870faa1 *R/HiCcompare.r
c101f8391ac58abf1e2fcccab75c0750 *R/KRnormalization.R
788481a3a614dbbcaca8c44d29e6377f *R/MA_norm.R
ca97e09f96b39b2158a2ad04824aa06b *R/NHEK.chr10.R
2e99a171453857bfe1f7e592c1838e85 *R/NHEK.chr22.R
66f3f4eb77d804ca7a45878646b7a3f7 *R/brain_table.R
c7bfe395ea869f5e4dfedb7b89fb55b5 *R/centromere_locations.R
cbfc236e5411c5d5de7dcb1e1a85e0b1 *R/cooler.R
c9a19ed30e7c4a5e166cdbeb7297dc0d *R/cooler2bedpe.R
df5b552fbf392c050f4cd0e76920e008 *R/create_hic_table.R
b06981d739d21c39f1c86b4423ac85d6 *R/filter_params.R
2ed179ee557b113b6e1987b294f4f4ae *R/hg19_blacklist.R
2a9c92031b0a237d5e736a529049f5d7 *R/hg38_blacklist.R
7f8e2e4ed0a4434fa33b2a073b5c31a3 *R/hic_compare.R
7a867fed9a0ec8bc52f904cb66185224 *R/hic_diff.R
4c4605a768d370477000575adfbd3fbc *R/hic_loess.R
4a5776732f65dccfa7964dc807348551 *R/hic_simulate.R
a49c0560ea5578a1401abc56792042e0 *R/hicpro2bedpe.R
776e75507fd6550a9ae8cad205f57e8f *R/hmec.IS.R
d63790c4254875231608b2f7f3fe568f *R/make_InteractionSet.R
1d27cde766b6f1895bd7209518e309c4 *R/manhattan_plot.R
e7bc2e3404677b91e0315eddb4e3c868 *R/matrix_transformations.R
19464d11f3d18807f418ee644983418d *R/nhek.IS.R
86a09457ed01dc8d055eddbf05d35d66 *R/plot_functions.R
f1b81535afdadbae014fc2de32f628ab *R/remove_centromere.R
286762e0edbc8241852fca64fb450fec *R/sim_matrix.R
5c4f555d84b26d3ac4138b090978a152 *R/split_centromere.R
5335ba2c8f9a053b870f69eb44c366b8 *R/total_sum.R
70395c4ac34fcb9be1c5b52ce79c2461 *R/visualize_pvals.R
843c89543fc90602ca725561ee3aeae2 *R/volcano.R
4250a07d13b348783d6a25af6a07dd94 *README.md
8ccb6ec5c10ccb00e42bb1f2f120d1ee *build/vignette.rds
5389615172ddde8bd594ff12f7de9ce4 *data/HMEC.chr10.rda
654d5470158489970ed2dd3d0fd5150e *data/HMEC.chr22.rda
52326198aa8752fc6c27c071b287dab2 *data/NHEK.chr10.rda
e1eaed7ef0d675e6b030418738014572 *data/NHEK.chr22.rda
d2b22a8bd32fbe103aa175d16340d9d1 *data/brain_table.rda
b4d6810698b8d520d99433e42f9b5d8f *data/centromere_locations.rda
49bd797e9348d77185b54172a777f19a *data/cooler.rda
0721ada84fa520f7294c35136c0f3fd6 *data/hg19_blacklist.rda
77bc5c40d2f4afdba1714ad9f80c8774 *data/hg38_blacklist.rda
1dacd7d0c4a4bf2bb3fa1f0decc571bc *data/hmec.IS.rda
58f1dc91b2b4f0285ffe7719dd23c3ff *data/nhek.IS.rda
f6a63174cfa8d1caf52c7e96b6a16fdd *inst/CITATION
4a672c551761ec41dfb5ab134268427a *inst/doc/HiCcompare-vignette.R
6e8916b11c4d5026d1e4f2e52c91d1ea *inst/doc/HiCcompare-vignette.Rmd
d24289bd41f9582b4561e295946edbde *inst/doc/HiCcompare-vignette.html
ba4d0e830c062e307bf01c3e4552c985 *man/HMEC.chr10.Rd
a85bc3dda9a4fef3ca0156d0001eac67 *man/HMEC.chr22.Rd
c1589659896366ca82363d9b4e154a40 *man/HiCcompare-package.Rd
f0cd09524659e9f0594399e8bc516e79 *man/KRnorm.Rd
aa25421b2a02607f3a1c9bc4e88a01f5 *man/MA_norm.Rd
e6de5956392875b41cecbf9a140c66bb *man/MD.plot1.Rd
46a8b602706fedf268df92a8e514b235 *man/MD.plot2.Rd
7165481384b43dbc8c7263b4e1b7944c *man/NHEK.chr10.Rd
68296d48cabfbddcc7cdfb280b422c59 *man/NHEK.chr22.Rd
0acd86603d792490dcb9325bf897ec06 *man/SCN.Rd
534dcade11f469c7f07814e29ec6bd15 *man/brain_table.Rd
2c7d083f0d23d26e855d31c961438c02 *man/centromere_locations.Rd
8e4b18f317cc200652a68c075eb2a5bc *man/cooler.Rd
83f7ce0ceb9d635c4752de560045f8e2 *man/cooler2bedpe.Rd
d66c08bec0493b8713a09ce04c7b9e32 *man/cooler2sparse.Rd
8f441f974d4f4ea52dcf325f6bb42d7c *man/create.hic.table.Rd
a2dbb9f8c833fdbbb20dcb753ae2b5ce *man/filter_params.Rd
9d9b0c740b2872875e37139fbeae669e *man/full2sparse.Rd
d1bc755900a5d8154ee5fe55476ca6a1 *man/hg19_blacklist.Rd
c1e04429a798547013b9dd3d5debe39b *man/hg38_blacklist.Rd
dde8596871b155f2d075fe0c57aba216 *man/hic_compare.Rd
3831f6d2604b102d3b811186e0ad5993 *man/hic_diff.Rd
c604a4faa4bc01d6356aee17be9a411e *man/hic_loess.Rd
2de15661f2da7efa660ec4826a88d3c1 *man/hic_simulate.Rd
9bc42e7552d015e652b6ae751c5effbc *man/hicpro2bedpe.Rd
8f94305b91262ecf95fb672a63cb90fe *man/hmec.IS.Rd
0ee16628170a8b91c6d55f5a5a6558ce *man/make_InteractionSet.Rd
912f88c6e63cf467594d68990c44ee57 *man/manhattan_plot.Rd
1c96093429f3e2c78a9e565871e003c8 *man/nhek.IS.Rd
e99f1efff35c3d017eff90ef9adb15ae *man/remove_centromere.Rd
e1c06985e80ab37b16a9f9e4b1927f74 *man/sim.other.methods.Rd
78f583820f27d41722972fbccd697428 *man/sim_matrix.Rd
57527e67f0ca0de4e4b2423e699da295 *man/sparse2full.Rd
5f31d8620f7ff87408fa8c420fc8b5ed *man/split_centromere.Rd
e39c293945cc206539cee386fd482ebf *man/total_sum.Rd
d7406b27b8e562af81fb933bc8c1affb *man/visualize_pvals.Rd
f7d877c5b9855abc0bd66a6a562c9e1c *tests/testthat.R
1f2f6c507c2885144edf973528929b19 *tests/testthat/test_create_hic_table.R
1f672999a11e391ec82a438108b6a426 *tests/testthat/test_hic_loess_input.R
c2d98dbd467b251a7c5b071753dd087a *tests/testthat/test_matrix_transformations.R
5b295b8519ac48e333dd2c9ae3a21ff0 *tests/testthat/test_pipeline_works.R
6e8916b11c4d5026d1e4f2e52c91d1ea *vignettes/HiCcompare-vignette.Rmd
