8bce301e05948aa873d91a7084f216e3 *DESCRIPTION
3b9af674814ba1eaeb209cff4fd918e1 *NAMESPACE
c9ba660f200dda797617b422eefb9adc *NEWS
311c13edf0e4bb808905558896c96cd7 *R/FeatureDb-class.R
f8be6fc3c497775083dae6136acd486f *R/TxDb-SELECT-helpers.R
429f05dad52c760cbc795036e9b0208e *R/TxDb-class.R
e9083ecdb92abc379ea4e567dd12c6cd *R/TxDb-schema.R
ad7ea2c8563fa80f155472c243c4cf8e *R/coordinate-mapping-methods.R
709d2379ee822bbbf0ff257ff1c883f0 *R/coverageByTranscript.R
e081965ca00c15960b409336d59d85b7 *R/exonicParts.R
1f874813602c37c1e48c1a572a191f4e *R/extendExonsIntoIntrons.R
b2f99151d806d01c892113aee53d75c3 *R/extractTranscriptSeqs.R
27565f2f5736248a8354475a5a8a5868 *R/extractUpstreamSeqs.R
423a8fe68982fb1b119afe57a1e8d830 *R/features.R
aa9835509363b6ec78e11214d0608b5e *R/getPromoterSeq-methods.R
6a2bd4429e8b4a69cd4d84ffbf41839d *R/id2name.R
a155bfad3d64a057bec3b9f6ad274cba *R/makeFeatureDbFromUCSC.R
ab81287619c4444ab72ec4bf93825996 *R/makeTxDb.R
308872de57f3d1d34565ba2e8d9d748d *R/makeTxDbFromBiomart.R
b32616c3aad3b6e5d05a70a03ba73584 *R/makeTxDbFromEnsembl.R
5d0981df37049aacc55fd007097e48fd *R/makeTxDbFromGFF.R
5e5b5271b9f74c671af8bbe23a7241ac *R/makeTxDbFromGRanges.R
b2f2c7e1d5c7d039c7f09599a8a59074 *R/makeTxDbFromUCSC.R
6f390be8b131156f757c29d176c9b8a6 *R/makeTxDbPackage.R
d2aca1bfa3b1e19535168cea1ad03e0a *R/mapIdsToRanges.R
31103e9c0e0dc2b38c7f9f257afefd43 *R/nearest-methods.R
059d470000e354e6887f8a3d686014e3 *R/proteinToGenome.R
334845ad1d8b0bdadfc4f78008474e55 *R/select-methods.R
dc31780eaf741e97c993a7e13f59460c *R/tRNAs.R
f4c64c9f830dccbbcbf10e84ef530fb6 *R/transcriptLengths.R
04f0e31060b26b039e08258bad559f7f *R/transcriptLocs2refLocs.R
697ee829cab916f2c36e56f37d185ede *R/transcripts.R
2ab09ef6ad1ab8affaa226af162e480b *R/transcriptsBy.R
098f2c40924ce886773e0c926a9f8bb2 *R/transcriptsByOverlaps.R
e3d1a88290efc7c4b884724c48d57d3e *R/utils.R
cfffa2da51ece9fc392a9859d4c1ad0d *R/zzz.R
7c1a9e8c7e2ffc8cd6895d8b7b919c2f *README.md
0b7aa99949310b9c4c91180245a64067 *TODO
5e66d8708b0ec9b5a7b912e7c28d86ec *build/vignette.rds
bcb46671f9de67f4c98c54cd2fb7b0a6 *inst/CITATION
21ec1b96b86c13934dc12f51fbe92679 *inst/doc/GenomicFeatures.R
8ea323a9e5c665a7baf2c245518c0630 *inst/doc/GenomicFeatures.Rmd
eace58ffa30a2c83eeac1b8c780707bd *inst/doc/GenomicFeatures.html
fee6caf1419105b26cf7d9c395cfc51c *inst/extdata/Biomart_Ensembl_sample.sqlite
3f250ddeef2036ad04e3262997971de0 *inst/extdata/FeatureDb.sqlite
fc06014bb8d7941c3edb675a531ba55f *inst/extdata/ITAG4.1_gene_models.subset.gff
afaa31bd1c9554ed3780eb605a94a16b *inst/extdata/cD.exByEdge-SG-Vig.Rda
dc0daac3944514f16c816ccaf1520442 *inst/extdata/cD.exsByGenes-SG-Vig.Rda
ae078e7847d64ac328c3012d845aeff8 *inst/extdata/events.Rda
fb0b31464aef1c487f56fb92a0245492 *inst/extdata/hg19_knownGene_sample.sqlite
d481e9e6b00c7cf4c04bbc64839f4e8a *inst/extdata/sample_ranges.rds
a1dd36dbbcc44996056cd354478d69ee *inst/script/README
0c9411e10aef71325f5667e7b11f2b98 *inst/unitTests/test_TxDb_seqinfo.R
72134f8f6707461480ae4d73cd874f2f *inst/unitTests/test_coordinate-mapping-methods.R
1d119721d92fe5eec5f0b997352eede5 *inst/unitTests/test_exonicParts.R
9821503c65017df34f02bd8c255241e9 *inst/unitTests/test_getPromoterSeq-methods.R
069b62da8a5029cb6b34744442daabee *inst/unitTests/test_makeIdsForUniqueDataFrameRows.R
4cdbe671455ce4f1bc93770dca05ea9f *inst/unitTests/test_mapIdsToRanges.R
ef829a2af3eaf0ed04df78a2f1d565c5 *inst/unitTests/test_nearest-methods.R
35fca0318259aa316acb0a6f303aa418 *inst/unitTests/test_select-methods.R
3d917d9392e50453076881ade0a59d1c *inst/unitTests/test_transcriptLengths.R
692cd8565985f67d20037bf22158f41a *inst/unitTests/test_transcripts.R
e4bcb4a15a201c6b98e9bd5f4c860303 *inst/unitTests/test_transcriptsBy.R
2a90822b28b6e86d1826f7f2eb362264 *inst/unitTests/test_transcriptsByOverlaps.R
6c006ee4c58f145c432ea2f4504ad80b *man/FeatureDb-class.Rd
bbf5824e2b32ae4b2905f9a80fa81f00 *man/TxDb-class.Rd
8ccb4df2754672498f9499699179be5e *man/as-format-methods.Rd
36b2a7b5919377852b39351dfcb102ea *man/coordinate-mapping-methods.Rd
730228ea0d8d52806f1d6ea4c5d213eb *man/coverageByTranscript.Rd
5c12ce518cd5cebe0f12654605b414dd *man/exonicParts.Rd
90d7590aaa7b8fff9023aa9f0be55acf *man/extendExonsIntoIntrons.Rd
0e0a0e385d493138eba1f76dd05fec6c *man/extractTranscriptSeqs.Rd
d63a5ca802980e534fe5f7e466094a5e *man/extractUpstreamSeqs.Rd
d39aa08e3019b5c687194f5537c267ca *man/features.Rd
fec61bf2238315f028d70461633decc3 *man/getPromoterSeq-methods.Rd
63ab8f70f560948c60b98053d3b76d7e *man/id2name.Rd
f24b757fc9a6c5ebbbd2d2b5aad2924f *man/makeFeatureDbFromUCSC.Rd
405d5fb4341f23acc7bc63bf877ed751 *man/makeTxDb.Rd
0cc1368c51784dfc0e9a4883707f302b *man/makeTxDbFromBiomart.Rd
d761d43cd73d6fce88ec50c0eade3887 *man/makeTxDbFromEnsembl.Rd
f4694ab000daca86b32594eae6caf4f0 *man/makeTxDbFromGFF.Rd
dde47e0e41b7dc28a4d948dc7cf9009f *man/makeTxDbFromGRanges.Rd
18707466d197871b3a13249201d24f1e *man/makeTxDbFromUCSC.Rd
53b09dab9440fd33a80d87f598b57fa5 *man/makeTxDbPackage.Rd
dab85ada55b08d122fc5567b129c24f6 *man/mapIdsToRanges.Rd
a9c7851d74866e9dcbd5a703c02d6e1a *man/mapRangesToIds.Rd
7f581360c4a7af40df9f2d2785b4d25e *man/nearest-methods.Rd
993e39c56a052538552d6af15bfd23a8 *man/proteinToGenome.Rd
10f1ec22e1fcda1e42c029c4e94c4ac2 *man/select-methods.Rd
c4e4593a86793c6ffd522da709771ba1 *man/tRNAs.Rd
4bce2ee3e0c87c642f73e3ad0b044d4e *man/transcriptLengths.Rd
1bbe11e7908eaf0be64da81d62392747 *man/transcriptLocs2refLocs.Rd
60a81381fb920ffd5571e6cf2848c179 *man/transcripts.Rd
cf076f34faa2177f9560955ec73d9b53 *man/transcriptsBy.Rd
9bf702c5f8844e68ab8452ff93016e94 *man/transcriptsByOverlaps.Rd
f99ee182487a835560ff6ff11bfaa93e *tests/run_unitTests.R
8ea323a9e5c665a7baf2c245518c0630 *vignettes/GenomicFeatures.Rmd
