341633d1c2eb9e0d73ffc037b39da44d *DESCRIPTION
26ed0642133af710c1877e614aa4a26a *NAMESPACE
b9b0862ded19e386ffcd758329f55bd1 *NEWS.md
9583dc82b2c3163e5b8a9fec6947b704 *R/GenomAutomorphism.R
745b0f59813daed5a8b233f3efdb2f56 *R/aa_phychem_index.R
9e2a330901bf0c6e4c2e52dae3412162 *R/allClasses.R
f52b789264d495fcbc220219b97c7496 *R/aminoacid_dist.R
a588f22bb82dbcb15d1060c02734e436 *R/as.AutomorphismList.R
f1a8d8a5c10221b7f13ad79b23dc2085 *R/aut3D.R
f5a55102a1b4b1ad335be8fb468611d9 *R/autZ125.R
7231ee66717f8163333d367b1058ff45 *R/autZ5.R
99978b0161fe093f10038ef0730d2752 *R/autZ64.R
9cb5058c59f4107eb3338d5209016160 *R/automorphismByRanges.R
3b09cd6e100d1d3cff364e5926a2f2fd *R/automorphism_bycoef.R
fe5f22a1f7b83ccab9c8ee4a8c5ef98f *R/automorphism_prob.R
dc6a80cf4a6e16f324bcca53a299066a *R/automorphisms.R
a0aafa27f814e91a4f6f5353df94d009 *R/base2codon.R
33036b6eedbcc4be8f1f00c464080997 *R/base2int.R
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66144955d3ec812fc721a797b25e00ca *R/codon_coord.R
8929b9f98d42193db84101d017f96296 *R/codon_dist.R
3ba4d3400add870bbb7f592c05d17872 *R/codon_dist_matrix.R
602ee027f46b9cbac45a3c5902c958cd *R/codon_matrix.R
62bbef935715bc223cba644164350ba9 *R/conserved_regions.R
646ec017f8297c91a6abd7a5a3ee414c *R/data_aaindex1.R
0c6ffb73b8c074d4014250323079397b *R/data_aaindex2.R
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95877616cfd991cfce59cc62731b5dbe *R/data_autby_coef.R
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a6935df6a844ea01669096bcdd20b317 *R/data_brca1_autm2.R
04a292362959f12ad3e8e125341f1b6f *R/data_cdm_z64.R
8fac57f375b86a0ee965e20cc21f7596 *R/data_covid_aln.R
a6402a2de5a634b638c91e237eceb8d1 *R/data_covid_autm.R
0a34fe7c54777e10c4244cbf8b36872f *R/data_cyc_aln.R
548ba1196e7e64b153e5ef26841bbf9a *R/data_cyc_autm.R
7a210217402466add0cf4ce6168a0a50 *R/data_dna_phyche.R
46a2e932dbce5d5de2fb1cdbf864ccdd *R/dna_phychem.R
c6ad9e069fcd9298c1667ec77c88017b *R/extract-methods.R
42005986e2b6a4ce9a64b856d98c6855 *R/getAutomorphisms.R
7783899b8a27bd182bf3291186301fe1 *R/get_coord.R
cc945193aed115c1d539698275120f9b *R/get_mutscore.R
c8e917e8155c832db67ba216ad72badf *R/matrices.R
050441c73650f71f8e2a6189f7aad476 *R/mod.R
edb17310ebdae033471d5d280576983b *R/modeq.R
ba883d6f37b62110f8239d9f5f6ae6fe *R/modlineq.R
1359fc83024d8d604ad200ecfbe42b1f *R/mut_type.R
6929e3aca15017978c33b248da83f7fb *R/peptide_phychem_index.R
2136088952f1499c07b361b568f59ce6 *R/reexport.R
4a030c2c37a239184c9f9e7568c73caf *R/seqranges.R
96430ed230c9ca8aecc4ec122b22674a *R/show-methods.R
018e4b01d504b5efa2937e76c05323e0 *R/slapply.R
3627ec3d7e4a7764c1353839b42b8fb0 *R/sortByChromAndStart.R
d7e13b00b2480c917d13805145e69e08 *R/str2chr.R
1cf00333c10609e1b197a93dd37b1838 *R/str2dig.R
b08d9557fb6b83763eca5242bebe80f5 *R/translation.R
7804e480119578a4ecc1c0c260e636be *README.md
fc384459e6d237e618004cc4bfbd3e51 *build/vignette.rds
b757fe3956b1cb1681c33d6b1a1740ab *data/aaindex1.rda
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58375988897450e2d447662078dfb06b *man/AutomorphismByCoefList.Rd
3933735a6b9fd5e80717b3a3514bdbbc *man/AutomorphismList.Rd
00335e6b6fd3946461a21c00634f18ec *man/BaseGroup.Rd
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9c647e02d8acfcc10d24f6a28478a21b *man/BaseSeq.Rd
2d37a8162eac017399a17672baf959e0 *man/BaseSeqMatrix.Rd
266ebef3846e274947e3df3bc87d4dcc *man/CodonGroup.Rd
18a8849b3351a0145424df567d567af1 *man/CodonMatrix.Rd
3b4574d68dd0c8f241518b688fbdba6e *man/CodonSeq.Rd
23546c73cbbc94bcfcdbd51eb70c355e *man/ConservedRegion.Rd
517c5b8112fc8d23f1a448e6e0dbe499 *man/GRangesMatrixSeq.Rd
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a2fd0346489b5ffb61e88d4caae373ee *man/MatrixList.Rd
3b539b23dbd2b267ad8ff471997bf2a1 *man/MatrixSeq.Rd
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8cffc265d72ef792de8f693f3cc39731 *man/autm_z125.Rd
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48765f0c7a11fe710a22bd64b8be34e5 *man/brca1_aln2.Rd
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ae54586884b9543c91ca1e4bbe9ced61 *man/brca1_autm2.Rd
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4079eb82204aefa99cbdb4bc42bca486 *man/covid_autm.Rd
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53e75ef9279c4911d9e20312ca4f5a16 *man/seqranges.Rd
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92262a20660ecace2cb8c021a5bb49f7 *tests/spelling.R
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a98871b3ac54ee534d8d89e0427e304b *tests/testthat/test-peptide_phychem_index.R
4b129dc836ec2cd084ae70f1acbb525d *tests/testthat/test-seqranges.R
b1a08c010c45e8e8a5904bc596e8e99f *tests/testthat/test-slapply.R
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919c32d4f29da8898d0889e52784145d *tests/testthat/test-translation.R
daab40b790cfdba5b3db83967fddd4f9 *vignettes/GenomAutomorphism.Rmd
