a8682554025e75181a42e79b574338ed *DESCRIPTION
0617dbc08f975892de10c137a22797f8 *NAMESPACE
e018da038c2828f2091b47a616e5185c *NEWS.md
a7d75fe1e5d613d264ba3e7d58f0c1ac *R/calcRP.R
032093edac028bc00309e23e44692051 *R/data.R
569617770b1a94a3670f824b5ff7f5c6 *R/findIT_TTpair_enrichFisher_parse.R
b4276d8afdd9e4178b25588f03ece8a4 *R/find_influential_TF.R
8a0826fc3fdb3a37b4eaa8e3a4a71e6f *R/integrateInfo.R
f386c0acc13dffb2ab98cc5bf363b652 *R/mmPeakAnno.R
c851f834206fbf02d2c89afa066b530a *R/mmPeakAnno_parse.R
e45ef96292b29eb5a382fdf8d6a56a93 *R/peakGeneCor.R
efccd0c5a326f959eee20eab303b7843 *R/peakGeneCor_parse.R
ab8eff884853d97fdf66965b17429815 *R/prepare.R
90e203ea73207cb0f1f3795def72486e *R/utils.R
9b1346f375943b911665c043c3a50726 *README.md
acb188248c3357e3de3036407ff37ebb *build/vignette.rds
eb824be1ca2cd1f87693db66f80f0ee8 *data/ATAC_normCount.rda
b0c382df389f29d0db5e4aa0025ac06a *data/RNADiff_LEC2_GR.rda
bbeb9bd1b5b1074919b4df93b3999eef *data/RNA_normCount.rda
8f0abf75951109594896511df7df572f *data/TF_target_database.rda
f55060e7262426f580591235cb331105 *data/test_featureSet.rda
774eada42ecbaa1569c9726a0363b917 *data/test_geneSet.rda
c37f7ec1eccb83075f9e753eff5c1db6 *inst/CITATION
3c885cea5bd0590694c9331a793a8a5e *inst/doc/FindIT2.R
cc11aac8f8a84023bb6ce7840a7b7916 *inst/doc/FindIT2.Rmd
b6340e725875e52c691a99357c5455fc *inst/doc/FindIT2.html
c7b55e70bd9b1acc35d6c469b902113c *inst/extdata/ATAC.bed.gz
f013dbd92fbb3451ff8bb6404fcf1057 *inst/extdata/ChIP.bed.gz
0676bba79fb3fa4edb15a93c8a22037d *inst/extdata/E50h_sampleChr5.bw
b19325d57a6778cedf045f75e3ebcc45 *inst/extdata/TF_GR_database.bed.gz
d2aa91513a0f2d7765a6d29ba2154945 *man/ATAC_normCount.Rd
08f89c92138ef82e4201513a201d63d7 *man/RNADiff_LEC2_GR.Rd
5ca507c38cc8d6024321789eadc57f91 *man/RNA_normCount.Rd
9c5b2f5e698f888e13b31c32d931236c *man/TF_target_database.Rd
ec72f494883eeb7149b08bf64709a6df *man/calcRP_TFHit.Rd
5d2275c40cb183dfd08ed5720734df95 *man/calcRP_coverage.Rd
1217ec8860fa982198a32c44ab5812d0 *man/calcRP_region.Rd
9cab7437e4521afe3e21e760495e4c0e *man/enhancerPromoterCor.Rd
e92fdbc50f44215d02857e70bafbcc8c *man/findIT_MARA.Rd
b902ed30d8161ed4d67d0795f2002403 *man/findIT_TFHit.Rd
7cb46aca5ec9ca4de4b67d50e6e584ff *man/findIT_TTPair.Rd
3b36c308267d1f6d2cd01065bd7852ff *man/findIT_enrichFisher.Rd
691141d3607cb21cfd5198ff1b8a67e3 *man/findIT_enrichWilcox.Rd
52afc8f9e529c4c32e0c2debe1db5a46 *man/findIT_regionRP.Rd
e15e328bb3e30ce9fb6cb7d82c5860e8 *man/getAssocPairNumber.Rd
3155dfee443684d8beec8c92225441fa *man/integrate_ChIP_RNA.Rd
e0ec63f869dcb5b689ef14643a4cb71d *man/integrate_replicates.Rd
21eb6edb5e8fb895f5ae9749848cc174 *man/jaccard_findIT_TTpair.Rd
e8334050163f8fb8ab71ce6558faf50e *man/jaccard_findIT_enrichFisher.Rd
128e5e3bb5e1bf94e5600a520ec75310 *man/loadPeakFile.Rd
6a9081ec6ffa9d0c2cc26ead483c6cfc *man/mm_geneBound.Rd
471d3203d90582ce1242b29794ab2055 *man/mm_geneScan.Rd
88e423cc9b2d5c42f67159cf1fcdcbe0 *man/mm_nearestGene.Rd
85b49bbba81e954783ffcf154b917fab *man/peakGeneCor.Rd
4677f8598688e1645e5fdf502811f8a1 *man/plot_annoDistance.Rd
b4b37130178154a2bca9edddfcc2fd48 *man/plot_peakGeneAlias_summary.Rd
7ac99ca1102487490fffc423e0c61d49 *man/plot_peakGeneCor.Rd
0e0f2cbdfc308deec9cd4234899a0a7a *man/test_featureSet.Rd
c059da3867cf7e59f5880a29f39a33d6 *man/test_geneSet.Rd
9fcc2ce271a592d18aa15e4cecdab0a6 *tests/testthat.R
b3d2e71af2e1ca733a762e41ff36151f *tests/testthat/test_calcRP.R
71e091079afd763294e4ffe78cd4cbdd *tests/testthat/test_findIT_TTpair_enrichFisher_parse.R
b79eda07dcfa152f7ffc82c21243c94f *tests/testthat/test_find_influential_TF.R
5e0b5a68c817f97080166beaf773607f *tests/testthat/test_integrateInfo.R
66526ba07f9cdb232ae7b3728b5c2f78 *tests/testthat/test_mmPeakAnno.R
0d2af673abe00275d4f4fdf866c8f01f *tests/testthat/test_mmPeakAnno_parse.R
b5f9e6fc59bf119a01b7ff31cf8b072b *tests/testthat/test_peakGeneCor.R
45bd8568efc37c4afe3eabed5fd92060 *tests/testthat/test_peakGeneCor_parse.R
ad522abad115e7a3697535f0d08182c8 *tests/testthat/test_prepare.R
cc11aac8f8a84023bb6ce7840a7b7916 *vignettes/FindIT2.Rmd
02c40d448be3c2689d2dfdeeee17c2e9 *vignettes/FindIT2.bib
