3b4aaafee5b85ea8ab6517b9380c4072 *DESCRIPTION
42bd2e8aa8e5db3b0ec7beb6bc281382 *NAMESPACE
21159c86bcc5c2add3d9a21490f8d5e4 *NEWS.md
35ef5bd520d0bbe1e552ce74addb0c5e *R/DNAcopyMethods.R
71c7d50fe1ed0eafbd103637c5ad4982 *R/changepoints.R
a189b53eabb881fc3a3e14556dfee518 *R/exonsegment.R
550d14ea05891d2100ba204f8ae030d6 *R/getbdry.R
76fd0225087cdd5e22e7c7195127c81b *R/glFrequency.R
2ff59c35b7b403086f9f5150a045aab1 *R/plotSample.R
b5c053bb0fc7d59afc1a1756c7246cab *R/segment.R
68c979b8c3a660cb32789550fc439c91 *R/segmentp.R
6b0705a78740320bdb062783bd167dfc *R/segmentsummary.R
fb7c7811b81addd437b14e9b5c5452b2 *R/zoomIntoRegion.R
b21666310cb8463665bea63e76233ce0 *R/zzz.R
0e48433360b0f1e6f9f796a2515fcb69 *README.md
7f648e9ee7440b7f09bb4b215e782588 *build/vignette.rds
0279c38d1b726df1db6a9d6a39817814 *chrom-lengths
7118a74df44aa3b08d250e9ae6314ead *data/coriell.rda
5d0a23cd6267712f5556996d000a2d47 *data/cytoBand.tab.gz
34c7856a55da9d1876c26d7569dee9a5 *data/default.DNAcopy.bdry.rda
53deebf9321023ada7c49539f0841a59 *demo/00Index
027f2877dc8867863453a2ac8b812d78 *demo/DNAcopy.R
df4d315873ffe86635916a3681d35626 *inst/CHANGES
e7f13de6e608011d9feba9573841e591 *inst/benchmark/benchmark,20090610,segment.R
c73dbf47b41155a568dda22e689950fe *inst/doc/DNAcopy.R
1d79c602a154ff1f9eced567e7821c18 *inst/doc/DNAcopy.Rnw
1479cc7c458452f385236f821ca4a2cf *inst/doc/DNAcopy.pdf
88851970804962a02cf8c5d851d2adaa *man/CNA.Rd
21be50aa8b3b03e51de2aa7681e9dd6f *man/DNAcopy-internal.Rd
e9ee65dabedc8df7f66027530649a274 *man/DNAcopy.Rd
8d8f14077a7884acdb3bcf377a1fdde0 *man/coriell.Rd
241193e1c40e6bb4da9a270221c5de27 *man/cytoBand.Rd
29e90231e7e3e2a3dc26af6000f86cf2 *man/exon.segment.Rd
ecc67e79791299b694007f44d50a8a99 *man/getbdry.Rd
749997582dbaca3c9182813acfc6068b *man/glFrequency.Rd
76e361b06badcd86ec249c5764ecd60d *man/plot.DNAcopy.Rd
5c9d6c92314e38a24e57deb859c75ba9 *man/plotSample.Rd
8f029ca45ff824e90a60cd91d5815b0a *man/segment.Rd
b71bcc1ac95f0e8182a4a65462a27827 *man/segments.p.Rd
03c3b7d820d48cacdb759da715ba86b5 *man/segments.summary.Rd
e356b0e080240d4ea12948dbbd1a05b6 *man/smooth.CNA.Rd
ad221e602b81fef1aa09ea564dc4d5f5 *man/subset.CNA.Rd
7e680b070c1274e2d015b3118d136a0f *man/subset.DNAcopy.Rd
a22a7abda74e3b0b7ccfd8719c2a6638 *man/zoomIntoRegion.Rd
98846e9194410fc5a7000f3ffb74f628 *src/cbsWtstats.f
704350b55a7a2e1445b484c02bff4540 *src/cbststats.f
c79b61d6a29bf2141c91794cd5222f55 *src/changepoints-wtd.f
e1d75314d0b09708f4fa88b1d7b90d95 *src/changepoints.f
616c584748e80af8ec257f6429bbb9ba *src/esegment.f
297b8774b329b654f55d54c3ee24fdf2 *src/flchoose.c
51343d5479c471bf932582e80566f862 *src/fphyper.c
01d21026225f3dfd0c7486627fd6567f *src/fpnorm.c
b12c72a352180cd4ffc0476ef71b4b30 *src/getbdry.f
c5ecc3c6f0a904fbc5c74baa239ac926 *src/init.c
56aa712faf3ad2da3a656c7ae37da238 *src/prune.f
38d4530efe19e61b4d63a6f13da8a966 *src/rshared.c
aa7465d2465c9ec3814ff188a60b8e92 *src/segmentp.f
dcfd0f59d84fb2df3af4546bc70bafc6 *src/smoothCNA.f
2ca7e70cc80e4849e906b47f25807c4e *src/tailprobs.f
03aaa4d4404b5b57466df3f12e4216f8 *tests/redundancy,20090610,segment.R
1d79c602a154ff1f9eced567e7821c18 *vignettes/DNAcopy.Rnw
2d5b7fa4051ac05370e63dba81a45360 *vignettes/DNAcopy.bib
