da55179fd278d544cf9512ade03cc97a *DESCRIPTION
b234ee4d69f5fce4486a80fdaf4a4263 *LICENSE
8a2314f626637d5c285cbd46a7e2982f *NAMESPACE
95153fde70c02af4b75b1c6c370ebbc1 *NEWS
054e5736dbd3c67ba55f263c7a7b4827 *R/DNABarcodeCompatibility-package.R
2b92803a9bd4906e9b14d7ed004c8714 *R/RcppExports.R
a5ffcd3746cf3919773abbaeac98eb48 *R/data.R
48deab0671cc20c628d70d9d14b4c879 *R/distance.R
ad3b488964a6dcb60eef3f66a35ccb99 *R/distance_filter.R
1417ebc9c4ab8d447d61b1fff5233719 *R/experiment_design.R
c408edff7dfd114c94a09a4d0e816149 *R/file_loading_and_checking.R
9cd82dc9438eaa97c36feb213f6255d5 *R/get_all_combinations.R
6020b37f8c08ace7f27c938951465b8b *R/get_random_combinations.R
8a8a9c05366cadcf24d831b59e7d031f *R/optimize_combinations.R
35e77fcd041d03c5488af90a2856440d *R/utils.R
35348ce00341cb1cabf921b13f6f8257 *README.md
988c2e261143fa29ccb2561fc45a76c8 *build/vignette.rds
f47093acf65fc11d935c6e62ed981c1b *data/IlluminaIndexes.rda
7ae40bc365d6aaa50ebe81012367fe39 *data/IlluminaIndexesRaw.rda
2d50846ab2b6e64f5e2a6717e7a33263 *inst/CITATION
cdfd2eade4a9cf8d854f09f938a47703 *inst/doc/introduction.R
a4f61b25efc36de813e6426765dfed29 *inst/doc/introduction.Rmd
9366af612e35ec38e40f1001923f4a93 *inst/doc/introduction.html
04a8b90c6aa38b365b5e1d801770fe59 *man/DNABarcodeCompatibility-package.Rd
4751e00d1157a1a93e29b35c34e35259 *man/IlluminaIndexes.Rd
87ea3fbeb204dc16b28b25152a382002 *man/IlluminaIndexesRaw.Rd
c1e049bc7a0ce238749f8e7dfd4a2475 *man/distance.Rd
ed9012500b42a9556a1491fef55eb1ca *man/distance_filter.Rd
6b68592ae8355ac6799cefc4170f441b *man/experiment_design.Rd
59272f19a25dd2abf350303ccb0a4562 *man/file_loading_and_checking.Rd
7c7da01b6d3f088d105407249d7dc2df *man/get_all_combinations.Rd
a2451a76c2ed6ff9ea2ecda904d7141a *man/get_random_combinations.Rd
f8f667484534b975886c874d1c2da746 *man/optimize_combinations.Rd
e6837d52cc405c7ac729ad8c580d77fe *src/DNABarcodes_init.c
fdabc9ca861faddfcc65e1ed4d800f30 *src/RcppExports.cpp
6d774ca34ec80e4f7b2db32797282b8c *src/cachedistance.cpp
7c7aaf90264dcef775b2b4fd99638de1 *src/cachedistance.h
c2ce86a9ba35775815d7bf8e8c1f5605 *src/create_distance_func.cpp
c34f90d6ab4794c2f3a5be865661d12b *src/create_distance_func.h
4f99062b1b9eb10cea798f607bb66e01 *src/distance.h
fe46857f8a8141cdc163ec0521e8495f *src/distance_for_R.cpp
20ecef634a43f384ded6449291a15fa7 *src/hammingdistance.cpp
1bb9eafb19f7cf64294ca1a111b04c22 *src/hammingdistance.h
73f87f3efb400362b6dcc6c175d73d90 *src/levenshteindistance.cpp
9f90ca4404b5cb4f40f2e90778d9b640 *src/levenshteindistance.h
5fc05aceccf5a9ebe9ef4f0c4e487ba7 *src/phaseshiftdist.cpp
e9dd025fa802817c5fbc8f47ce5870b5 *src/phaseshiftdist.h
6afc6875e5f10ec8dfff0890e7d9b2d1 *src/sequence.cpp
89b0efc368f8ff64507ca20269031c56 *src/sequence.h
d7f5f768d71564edf5fb2e1dad209f49 *src/sequencelevenshteindistance.cpp
d3244ba6beb48bdcf14d92d9eedbc7c9 *src/sequencelevenshteindistance.h
4d378310127ae49cb2605d50b3e39a8d *tests/testthat.R
725364d7a4fb9c486ec0a4d24475b15e *tests/testthat/test_file_loading_and_checking.R
a4f61b25efc36de813e6426765dfed29 *vignettes/introduction.Rmd
