Package: CTSV
Type: Package
Title: Identification of cell-type-specific spatially variable genes
        accounting for excess zeros
Version: 1.14.0
Authors@R: 
    c(person("Jinge Yu", "Developer", role = c("aut","cre"), 
             email = "yjgruc@ruc.edu.cn"),
      person("Xiangyu Luo", "Developer", role = "aut",
             email = "xiangyuluo@ruc.edu.cn"))
Description: 
    The R package CTSV implements the CTSV approach developed by Jinge Yu 
    and Xiangyu Luo that detects cell-type-specific spatially variable genes 
    accounting for excess zeros. CTSV directly models sparse raw count data 
    through a zero-inflated negative binomial regression model, incorporates 
    cell-type proportions, and performs hypothesis testing based on R package 
    pscl. The package outputs p-values and q-values for genes in each cell type, 
    and CTSV is scalable to datasets with tens of thousands of genes measured on 
    hundreds of spots. CTSV can be installed in Windows, Linux, and Mac OS.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.0
Depends: R (>= 4.2),
URL: https://github.com/jingeyu/CTSV
BugReports: https://github.com/jingeyu/CTSV/issues
Imports: stats, pscl, qvalue, BiocParallel, methods, knitr,
        SpatialExperiment, SummarizedExperiment
Suggests: testthat, BiocStyle
biocViews: GeneExpression, StatisticalMethod, Regression, Spatial,
        Genetics
NeedsCompilation: yes
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/CTSV
git_branch: RELEASE_3_23
git_last_commit: 9f76a6c
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
Packaged: 2026-04-28 21:30:44 UTC; biocbuild
Author: Jinge Yu Developer [aut, cre],
  Xiangyu Luo Developer [aut]
Maintainer: Jinge Yu Developer <yjgruc@ruc.edu.cn>
