b5cabb216ff7c4e16c3bc05d99a2c071 *DESCRIPTION
8ac64949d629eb04c72ff2e8920151f3 *NAMESPACE
0e712c3c76c578c2754d3f6cd934084a *NEWS
1fdee96f556b4a2fe271722fd1ce173d *R/FolderAnalysis_functions.R
2c1072d6e25c3396b582f935cea944c1 *R/FunctionsFromDeprecatedPackages.R
646005e1f663bd3e1a2cf46e3972336f *R/Library.R
85aced6695a2d0513c83407abb73e2f6 *R/SyntheticData.R
45f47af33748146ecbf060e17b524a48 *R/server.R
495651bb3fce44b6a6b7413bb336c1fe *R/ui.R
937be26f7bb31a91368fd9f2e7b03321 *README.md
e08c6aae4f4a9c5993f80e22852e5aa4 *build/vignette.rds
de63305d03a8c2dfb54ace5d42e26030 *data/referenceReadCounts.RData
dc34f4ffdb9cb3a853bf339bad776943 *data/sampleReadCounts.RData
57266cec9e6529a3cf13e155799dffa0 *inst/doc/CNVPanelizer.R
1eb1a42d9faa368e23ae0aa52cfe4023 *inst/doc/CNVPanelizer.Rnw
54b211a3312110afe89a56f27dd5329f *inst/doc/CNVPanelizer.pdf
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/regions.bed
2852cb12477d4d8d41f3deca6bf238d7 *inst/extdata/www/CNVPanelizerLogo.png
7869bef63182a91da1dad2225e899a42 *inst/extdata/www/favicon.png
94bb07d505b09850425339b59a60315e *inst/unitTests/test_testing.R
c5cd5ab74b85de35b9ee508418194b07 *man/Background.Rd
7ff0592d9e180fc94018951a7d39677e *man/BedToGenomicRanges.Rd
73aee1bf2e6f8e5537d27cfdf948ebc2 *man/BootList.Rd
a45017b5646ef2dd132bd1e9580da069 *man/CNVPanelizer-package.Rd
8b63bd2cc3b42071304121ca6c4ac52d *man/CNVPanelizerFromReadCounts.Rd
ee922d78afe41dbb1331b9985f36df4b *man/CNVPanelizerFromReadCountsHelper.Rd
4edba857935c3dcc13a81fad1acfa9fa *man/CollectColumnFromAllReportTables.Rd
bbc318e345c30cbf928af98b154bbefc *man/CombinedNormalizedCounts.Rd
f5085d7a14694b55bbac2a5e037244f7 *man/IndexMultipleBams.Rd
58150b8535fce7ee42364d6d2adb2d1b *man/NormalizedCounts.Rd
4b1a4d636c140ce1132abb791834d28c *man/PlotBootstrapDistributions.Rd
2823f4e70fd8b45b7d03828dcf71e758 *man/ReadCountsFromBam.Rd
071d2a0813b993ba02c634fa42fbaa03 *man/ReadXLSXToList.Rd
ecb4486c172c52e0d1e0e7e613331cd0 *man/ReportTables.Rd
3ec020029630d6d3532384b2a17c9aca *man/RunCNVPanelizerShiny.Rd
0623be8ec0298f87d72a2aa41e14b82c *man/SelectReferenceSetByInterquartileRange.Rd
825885a7dd5db82633563feb9b0c51fb *man/SelectReferenceSetByKmeans.Rd
d7df0b23a9f43087b29aabc17e41e6ec *man/SelectReferenceSetByPercentil.Rd
8c4be9620a549effe428a11d74ccd1b0 *man/SelectReferenceSetFromReadCounts.Rd
b140200c9d400c2cc98b12c2aa2215bc *man/StatusHeatmap.Rd
c764f692cc3b37b66ad2aba4436bce7b *man/WriteListToXLSX.Rd
c279adc8883f2cdd7e8669aa2d58a4cc *man/referenceReadCounts.Rd
7b279accc782e29c70b53cf872cceeee *man/sampleReadCounts.Rd
b2964008df263c028b262906b872f72b *run_tests.R
dc8df45ea02de263fc42843cfb055256 *tests/runTests.R
1eb1a42d9faa368e23ae0aa52cfe4023 *vignettes/CNVPanelizer.Rnw
68b329da9893e34099c7d8ad5cb9c940 *vignettes/CNVPanelizer.bib
