82de2f4d12b071ff1baf3336ea18fc71 *DESCRIPTION
0c9d977b83b38b39c582af3e7b3e50f2 *NAMESPACE
a85ca1b9b58b2456afe381a1bacf0b5e *NEWS.md
8ab5b2ce6e5ac4a5eae9640e286f997c *R/AllGenerics.R
5a2765f710d3e9d3b1ecd8c13719b947 *R/CNVMetrics.R
99fa07a639bf4111da397dc938d77160 *R/CNVMetricsInternalMethods.R
68c68e6998d996ca189d717e7cbbbe89 *R/CNVMetricsLog2ratioInternalMethods.R
c022892d89121fa648058c2ceeb5d6c3 *R/CNVMetricsMethods.R
ed9e588c300bf801f49ce8b0a5565aee *R/CNVMetricsOverlapInternalMethods.R
3e3971af4933d09441cf53e8a1480c07 *R/CNVMetricsSimulations.R
80fb75eb62dba05cc7b7e2f615cceb88 *README.md
7e215849e0851fad93bd115373cc6d63 *build/vignette.rds
18d1550cad4acfad233da723477c197c *inst/CITATION
bfd97005ce00530aa4a94b7fe4edbe81 *inst/doc/CNVMetrics.R
030caea77525e2a5170df5f162b7af3d *inst/doc/CNVMetrics.Rmd
e9e9cf66bdee4e8d4db47368e15b897d *inst/doc/CNVMetrics.html
78b79f396042a4f73666d793e70b160d *inst/extdata/demo01.seg
96fc49e415c2c57ff8c7580422951ea6 *inst/extdata/demo02.seg
b1f7e9b3f80708ca4b846d6137df6d79 *inst/extdata/demo03.seg
8acc6d39a281da5981a95be837ffb760 *inst/extdata/mm10.blacklist.bed
b416715968205090da4c2506982867a1 *inst/extdata/mousePairedOrganoids.txt
9b425878d4d5ee7cb7e38c1293e1753c *inst/extdata/mousePairedOrganoidsInfo.txt
0f60d69ef9402c92a8755b5e6394bd6f *man/CNVMetrics-package.Rd
e2cddca5a536b74b30f9fbe7279d4cfc *man/calculateJaccard.Rd
e617d218f389ef37044d3cf61702397c *man/calculateLog2ratioMetric.Rd
b014d8a59f14dd67b5677c643f5190fc *man/calculateOneLog2valueMetricT.Rd
ef952fddd847cfc00e23cecb5daccb84 *man/calculateOneOverlapMetricT.Rd
4fd73257912ea1be1cf68001248b2e04 *man/calculateOverlapMetric.Rd
b1ab6b253932873881479e90f092c7a3 *man/calculateSorensen.Rd
9f1562859f73bee0069c7b10dc4f8b3d *man/calculateSzymkiewicz.Rd
249ab220ced38da629fb52d00c2f7ca1 *man/calculateWeightedEuclideanDistanceFor2Samples.Rd
62000a77372f63c33522a28497f625ba *man/createDisjoinSegmentsForTwoSamples.Rd
36903abb97f3252dd5c137f58ff982b6 *man/figures/CNVMetrics.png
2619ff571ff8611c577cdeb5399bec8f *man/figures/CNVMetrics_text.jpg
5e9443d646edeb5ae91810b6f958deac *man/is.CNVMetric.Rd
f9bb40e73a35d845c05170a5a30e6f55 *man/plotMetric.Rd
40ed07429bc746de493273a27af96ac4 *man/plotOneMetric.Rd
ad23389cebcd5391a48ea94c7dda0a68 *man/print.CNVMetric.Rd
e85acdff57e0e8e09c64a491e3607dc4 *man/processChr.Rd
6935541ab3716c58d26d445c7039f3b8 *man/processSim.Rd
a1770eb5a01096754f779876849ec784 *man/simChr.Rd
a4249cf253cf9c419a606026b6170d1e *man/validateCalculateOverlapMetricParameters.Rd
e6299fffcea506b43b6a46bd1bae7347 *man/validatecalculateLog2ratioMetricParameters.Rd
a7c4c4b5c09e845b1bfc4c04c242b28c *tests/testthat.R
e07e223eaf478ece0ea0d5b74bcc6fed *tests/testthat/test-CNVMetricInternalMethods.R
3fbbe8f4db8cf06addfa674f7566159b *tests/testthat/test-CNVMetricMethods.R
44358c94c9a4fefb2eca56461d1e4ce7 *tests/testthat/test-CNVMetricsLog2ratioInternalMethods.R
3670ce0f32c0082a6f2438d61e618e56 *tests/testthat/test-CNVMetricsOverlapInternalMethods.R
258f701489b57a6a70d9756ae3f452a4 *tests/testthat/test-CNVMetricsSimulationMethods.R
0b38286844c935816f11d4e15d9fde1e *tests/testthat/test-genericCNVMetric.R
030caea77525e2a5170df5f162b7af3d *vignettes/CNVMetrics.Rmd
b6108f45e4d29f14e64f56f52ebc6882 *vignettes/CNVMetrics.bibtex
6336f3b6a197e4fb08f0c89eb346971d *vignettes/CNVMetrics_partial_workflow_v10.png
2619ff571ff8611c577cdeb5399bec8f *vignettes/CNVMetrics_text.jpg
4232b0e32e92b71d35573eb6786f5d98 *vignettes/CNV_mM30_mM10_v03_Feb_08_2021.jpeg
839c81dd5ac184295382066a8a2ab7c6 *vignettes/CNV_mM30_mM10_v03_Feb_08_2021_small.png
0bcf63880c068ab224ab218d26181d25 *vignettes/Input_CNV_call_300ppi_v02_low_quality.jpg
2add5458e4abc06ab89fe018e69d3a09 *vignettes/Input_CNV_log2ratio_v01_low_quality.jpg
1ba69c68873b0325d18f926e42f934b9 *vignettes/Simulation_chromosome_workflow_part02_v03.png
a114e64eda4baf8e98f533ed75796814 *vignettes/Simulation_chromosome_workflow_part_01_v03.png
