3030d5eba120eb98b18a7529e013e5fa *DESCRIPTION
c4e9ab21111846a319444f148aa7037e *NAMESPACE
d1d3108ca3dd933b063aa820ba6dea9b *NEWS.md
e4158bc3983e7d9ae3466c90979ca996 *R/BioNAR.R
27bd944927bccf4ab935e60cdf285db2 *R/annotateNetwork.R
ca97cbc77c4a8e73e9b4c83f85c22abe *R/bowTie.R
a30e166e042681cf4ca11fbdbdcdf9e1 *R/bridgeness.R
b23425526db76877550187aa74843588 *R/buildNetwork.R
a23936fd928e65ecb3f8502f1d7f4e9f *R/clustering.R
beb40adba51aa1cd898c86f90f230190 *R/consMatrix.R
d2eb67ae02ca3ebbaa3e93d8fb386594 *R/datasets.R
74f2951e3f23494388e854e9b2ac3230 *R/diseasePairs.R
e296cb23667af58ced0281f57d42e8d1 *R/dumpNetwork.R
55cd52e0d9ee9b06f008d6fc71a63a37 *R/dynamo.R
96c69b8612892740cd16615db8cd2154 *R/enrichment.R
186c948fb4d7d35a8b104aaa58256031 *R/fitPowerLaw.R
1193473754407c73ed9425151ddb614b *R/memrob.R
de8e176cb96f6334135e249225e45561 *R/normModularity.R
9ff0561451cedadc91db9ee9611749ab *R/perturbationEntropy.R
1a7a4e7d04d49b64f386e351d1db894e *R/runCentrality.R
ed8d371eefde5c1be083f849af13eaa8 *R/sampling.R
869edc47c3061dd8738abdedbb734e7b *R/sigmoid.R
a80705d8e5500416cc4328848240fe26 *README.md
05934b44a6f8c48810dc9fa7a6f526ea *build/vignette.rds
7c02db59f103eefdac4c390115f8f7b0 *data/diseasome.rda
c2ee88729ab3a561d1d15d480a378965 *inst/CITATION
c53ff30e90399d25ee845a3cfb919855 *inst/doc/BioNAR_overview.R
55d5fe707e70ecad26683a5b14864ea4 *inst/doc/BioNAR_overview.Rmd
8a1a7ce6b7f17efc4479d233d136620e *inst/doc/BioNAR_overview.html
612369184cb21b37b805cbb8233bc40f *inst/extdata/BrProteins_2020.csv
a26206760607ccd60f256cce73be9ab9 *inst/extdata/CorePSD95Complex.csv
f47798b03c798b6f50f44ed75a2ff50e *inst/extdata/PPI_Presynaptic.csv
20bd590966df6e4b9a14b963b6135445 *inst/extdata/PPI_Presynaptic.gml
28cf977d8b620ab4fbdd61ea55ddf92b *inst/extdata/PPI_cluster.gml
76abd1357511f5b1d3a867c542fe61b1 *inst/extdata/PSD_annot_cls.gml
9ea61c6dd8dea57d22232b821e11a8a5 *inst/extdata/PresynAn.csv
08cabddfe95412658afd8572612d858b *inst/extdata/SCH_flatfile.csv
d5733c82e3e4230cbfd1df63304beb99 *inst/extdata/flatfile.go.BP.csv
5ddb11765486ba911c9c1ace4fff1298 *inst/extdata/flatfile.go.CC.csv
b780f5b15417b715e6a32c74f571615b *inst/extdata/flatfile.go.MF.csv
bc66d05eb64a9fa50ac5a89e5429884a *inst/extdata/flatfile_human_gene2HDO.csv
71b13fe138930069c56a809f5fdab66a *man/BioNAR.Rd
6d8f99b1dd920276e70b4247a4b1c3a1 *man/FitDegree.Rd
7becf8819d3aac2d12417e7182183c8a *man/PPI_Presynaptic.csv.Rd
6e2c0d8ebbf218a8dacfceb436910366 *man/PPI_Presynaptic.gml.Rd
a733229336fbdb10250c028653484c45 *man/PresynAn.csv.Rd
ee7557176fdcec3ffe581459aec54cde *man/SCH_flatfile.csv.Rd
3dec5fa94309559d8cebb20d5e62c52c *man/addEdgeAtts.Rd
d02700faaf780af36df548b23b8a8a09 *man/annotateGOont.Rd
9b10850e8112bd6c874d3fb67b7481b7 *man/annotateGeneNames.Rd
f9639148493295c896368352c75bdb57 *man/annotateGoBP.Rd
1c354654984f4783ffe63b03b049baed *man/annotateGoCC.Rd
de62376c5066d7a5ced5d3f075ad8da1 *man/annotateGoMF.Rd
75be969371d443bd3dd80fc80e5bd1f9 *man/annotateInterpro.Rd
94daf01180dd41143c61230c43b3d60f *man/annotatePresynaptic.Rd
fa75ce21187a9a54afe0b80f5fee5c61 *man/annotateSCHanno.Rd
c1d74fce39b75b0d406fdaf2349c735c *man/annotateTopOntoOVG.Rd
2b81ff46aa9893f70c3be0d41cf7722c *man/annotateVertex.Rd
614d606f2b9d6b0235b3fb00e0f81897 *man/applpMatrixToGraph.Rd
1584080ae2a6a1e8575672491b169c9d *man/buildConsensusMatrix.Rd
a9e626dd22f94d6b0591decf77c77d12 *man/buildNetwork.Rd
9d12a22a87b952c7f09305a3f156242e *man/calcAllClustering.Rd
54ba4dcf53b28ae06a661a82457171d7 *man/calcBridgeness.Rd
121d147c4085e27de483ca2c80aee7a6 *man/calcCentrality.Rd
1255bb81cd1d035109e9773db44e1e0d *man/calcCentralityExternalDistances.Rd
bcc97fec487ee84e5f5a349e9977683e *man/calcCentralityInternalDistances.Rd
d4f1400bc5d68131706d19be539f0cda *man/calcClustering.Rd
d8c095757ad59c693414b6a0ca78a26f *man/calcDiseasePairs.Rd
123d6c080f0eb059fd6270f1c6cc56f4 *man/calcEntropy.Rd
374cda2cc6475b9a0f35d9ee41a84ec2 *man/calcMembership.Rd
8661ab041cad512fefcf7f8702dfa92c *man/calcReclusterMatrix.Rd
bf371f1d923e8494b659ff01b3aba3b7 *man/calcSparsness.Rd
e022ef1e864bea3f783305b15f14665f *man/clusterORA.Rd
48de1416c17aec96790451c3a1baf8cd *man/clusteringSummary.Rd
fe0d599df30bed7dc2fe558e699b0368 *man/compMembership.Rd
419298d1515c4382bb0b1b10795972c5 *man/degreeBinnedGDAs.Rd
41423faf29b78688e4bee60b7c0954f5 *man/diseasome.Rd
12f34541665ef6086fb3aff4605f5217 *man/escapeAnnotation.Rd
6220b68d04aaa77ed35ac938659fc05e *man/evalCentralitySignificance.Rd
e7429cd04334629e858976ebf765449e *man/findLCC.Rd
445569085541408ec2ecd810b8bbb099 *man/fitSigmoid.Rd
fa10e98fbee29e22a16988b74cdcb2e2 *man/flatfile.go.BP.csv.Rd
fda8c2c1abebfc50cac96759b6e0f8ab *man/flatfile.go.CC.csv.Rd
a80f97db04560dff1483636dce0c31b9 *man/flatfile.go.MF.csv.Rd
2ce9e805d22175a8add56ac5874f60e0 *man/flatfile_human_gene2HDO.csv.Rd
147fe2ae7e183239e352825829c99cda *man/getAnnotationList.Rd
2bde4fa7da19e6450d9c6c70991538fe *man/getAnnotationVertexList.Rd
a3e27279556a78d3eec88966c6de0bd8 *man/getBridgeness.Rd
df6e94a420459acf6895514605b8a261 *man/getCentralityMatrix.Rd
0dbef019680ec4b9aeb66585e38b771d *man/getClusterSubgraphByID.Rd
49362c3265036b2ec58dfb1561e621cd *man/getClustering.Rd
973feea3d684bc414f9a35947d612c3f *man/getCommunityGraph.Rd
237ba1c6aba6bbdd2ee8f2a46c44a6ea *man/getDType.Rd
7ff7ce900b59f7bacc10e3cab658b00c *man/getDYNAMO.Rd
dff373aba8de3e6942b9fe006e1c8f81 *man/getDiseases.Rd
7af434cba3c8e3aef1e49d9c212342dc *man/getEntropy.Rd
c5c21dcf3b9926818f03cfc936d086e6 *man/getEntropyRate.Rd
50cf39e140ceb6e2a3a76bf8a9581eaa *man/getGNP.Rd
d9f9995344b165ce02e331b7c011d255 *man/getGraphCentralityECDF.Rd
fdb31c1b85696995d12127cdd8e3e45a *man/getIDs.Rd
8f20d5484f79a17d27a748f3524b3070 *man/getPA.Rd
b40a34b402cc93e259b7cea5444ebeaf *man/getRandomGraphCentrality.Rd
a456d73ec09d4cd3539c64a86d4b8581 *man/getRobustness.Rd
03191ab296612896747feb5277aab56e *man/gofs.Rd
14e98518b042c73ab33430b32eb06114 *man/law-class.Rd
a1d5150898e4a6299f801676108dcee7 *man/layoutByCluster.Rd
c7cb4c9acb5cdaacc731e26037798f4f *man/layoutByRecluster.Rd
125d544bb5a0565a799df6132ad4e6d5 *man/makeConsensusMatrix.Rd
a4896605606aa410c38dff45a9dd5d6c *man/makeMembership.Rd
c8f86d441a2635d90d7c86f6d53bc837 *man/markBowTie.Rd
74ff08f17c8e9697918ff31ae377f5b8 *man/metlMatrix.Rd
e2e512425cc44cc1111e5bc3f859abf8 *man/normModularity.Rd
56a4240090532b07d8df150a5c87aca5 *man/permute.Rd
ec7da962c49ba93642e127ac94690a0f *man/plotBridgeness.Rd
d1a836c9a94f1064ebfa3b62824e6f27 *man/plotEntropy.Rd
d36de09b591f83e0c8701aaba11805eb *man/plotRatio.Rd
4e0824cd3b3c7723068e2f29850dadb3 *man/plotSigmoid.Rd
313bc646e470ba584e28b9d622949f08 *man/prepareGDA.Rd
80cd4152966789d886caf6c012b9316a *man/recluster.Rd
831f729f844c8444c70c9399faf50e68 *man/removeVertexTerm.Rd
3e318bfb9678592f804825811eb4f9ef *man/runPermDisease.Rd
6ed3fbcf6fde1f06691d715615a91637 *man/sampleDegBinnedGDA.Rd
51d5ccfc0d105f3314c412fae16c1db6 *man/sampleGraphClust.Rd
363d45fa69c1b0d26d23cb2f8f71ec30 *man/summaryStats.Rd
6a793842145d6f405d2af843c0100230 *man/unescapeAnnotation.Rd
67a7f69cc91cfd102d2ae6e2fa1ae702 *man/zeroNA.Rd
05afb93015bcfc2462088f18b1058c13 *tests/testthat.R
bf2dec6d5bfb14103c774672b75617e9 *tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
f0ad8ac21bd3483883006962693eaaf0 *tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
cec8ddb0bc1d2b99439cca4f35a7c196 *tests/testthat/test-dynamo.R
334bff2856f863268428c7417256d254 *tests/testthat/test_annotation.R
0b5607b0eaaedfafdd895fac46d03a18 *tests/testthat/test_bridgeness.R
e9b6ddcf488e5ef0b97410fca1bb6618 *tests/testthat/test_buildnet.R
e4616231dae56476a4f922791c1fe7e0 *tests/testthat/test_centrality.R
b1e9b8fabead0dd0b65a2ff6aa50b9db *tests/testthat/test_clustering.R
e4b7236aadc5b6ad9619f1f01c9fd293 *tests/testthat/test_diseases.R
71a45402635aef1ad3c42c54f3ce0ff6 *tests/testthat/test_fitdegree.R
c123dad74377ce45c1f602df9ddd135d *tests/testthat/test_memrob.R
55d5fe707e70ecad26683a5b14864ea4 *vignettes/BioNAR_overview.Rmd
