7253166ac056c423ed54aedefaabf6c2 *DESCRIPTION
cbf51fdd5c9728c660b94a2561602e22 *NAMESPACE
788dea2a6b08ebd21d593729934fb621 *NEWS
1d9cbeab1161352296f50e7cc43429b8 *R/AllClasses.R
23dc57cbc7b936fb7358ce9269632c39 *R/AllGenerics.R
ea0b3814d597d09d0c83031b18643378 *R/aldex-scaleSim.R
a1bdac8250a3c5680d4ed60a71fa9597 *R/aldex.r
193749422b2a524826af4521ed1ea9f3 *R/clr_corr.R
5ab75decaf3ade865cacac72c307d15f *R/clr_effect.r
c79bd07c6449a5e279c16536cc475663 *R/clr_function.r
f14d00947a755a417c09d518f4053a3b *R/clr_glm-tpq.R
7d6d8c397c69dc02936375d5233b850d *R/clr_glm.r
6e0ecdbab290d03346f0178314820a19 *R/clr_ttest.r
7cb5ada84f9b8166769d2bd860deb567 *R/expectedDistance.aldex.r
9b18b90b4321bb3cded56218b20ede2c *R/glm_effect.r
87737135855f58a7e428a16795b99a3f *R/iqlr_features.r
24b8d9ba17ab34904c3340c7886a3f0a *R/makeScaleMatrix.r
3b290682ef45a60d9b3f46cc82d0869e *R/plot.aldex.glm.r
49b4d64183e930789cf14c02cf567a85 *R/plot.aldex.r
d41f43e35efc44f6be03f5723b066965 *R/plotFeature.aldex.r
c28a19027747844a8c3739ab908b3cb8 *R/progress.R
e4c99bee10efdfd11414a9e6bab432a3 *R/rdirichlet.r
d1a3788df879e3041e4910edf4b35725 *R/stats.fast.R
ce3d4dd9e1d451455d2f90c8ce9d5f1e *README.md
702b1aa4dea6066d7379c819ad28ebe7 *build/vignette.rds
79adc0dd2dcdf0e3908b89fc0405bad5 *data/selex.txt.gz
94ca1856514e66cb51a08dd67fb11ce4 *data/synth2.txt.gz
336a5412ad557d5e89111ed0d0a11b35 *inst/CITATION
a8a5151419fabbb0f06600cc5b1774b5 *inst/doc/ALDEx2_vignette.R
c599cd95010e71777ce36800c2e782e9 *inst/doc/ALDEx2_vignette.Rmd
81e19299cc03d42f34c76a50da231523 *inst/doc/ALDEx2_vignette.html
dbc2c020124f90dd1d341c94720f78d8 *inst/doc/scaleSim_vignette.R
562828f94b537b9b241c5e60c5960c43 *inst/doc/scaleSim_vignette.Rmd
e07c60b90c261c07d06ef9abd4ab0878 *inst/doc/scaleSim_vignette.html
05b4f22ed53c11aa68e989f2e13bca7f *man/ALDEx2m-package.Rd
a3d0d964c98fdd19f2bd1e3bb5464cad *man/aldex.Rd
bd319f9e2d979e3123046652d198eee0 *man/aldex.clr-class.Rd
5b15cdd834f2fc883fe12a9b3a809357 *man/aldex.clr.function.Rd
ee7f3e173e1e165a144bea2238219e45 *man/aldex.corr.Rd
c36de1fe4c9c59f774f1708bae1c04ca *man/aldex.effect.Rd
c94b304377e83aa2411cc7eb41780607 *man/aldex.expectedDistance.Rd
2004fe9a8770f1c469e286ff0c1be4b9 *man/aldex.glm.Rd
0f44ca5d7aaf5d339078da8f049753ea *man/aldex.glm.effect.Rd
7451d60574bae89a446443d2e59e0c09 *man/aldex.glm.plot.Rd
fde5eb90a657d5680daa4873b5d445df *man/aldex.kw.Rd
97cb03521226a0ca086cac1d2cfa5e0b *man/aldex.makeScaleMatrix.Rd
e4788c682cc7a4c0a207981cb2ffcfb5 *man/aldex.plot.Rd
6b93a3850d44e81ac24e11b32fc15ecb *man/aldex.plotFeature.Rd
167df649c39854de2402b20024e407d8 *man/aldex.senAnalysis.Rd
323a01ef782d5df4b6413df9c3d94f23 *man/aldex.set.mode.Rd
e32bbb67295ebca15e74ae8ec6905982 *man/aldex.ttest.Rd
cf1f299cc3db0619cb65ac1f8c3c5f3e *man/getConditions-method.Rd
577c31943af33776c66bd64e9a5bda62 *man/getDenom-method.Rd
7e596cbfa509cdbde16bd9fa48d42c1f *man/getDirichletInstances-method.Rd
2527aa95e356d73faecbd9a5149dc05e *man/getDirichletReplicate-method.Rd
1fc42215560b419c18ffc3eb9f893817 *man/getDirichletSample-method.Rd
344fc7d5f1ee49fec6bf7d610adeca3a *man/getFeatureNames-method.Rd
f4f247ed68ef39e9b31d897c5c5c1b84 *man/getFeatures-method.Rd
fc87a1fce2dd8d3ab23e42143c34ec1b *man/getMonteCarloInstances-method.Rd
66671aa6ed50611077f38bbebdbc1540 *man/getMonteCarloReplicate-method.Rd
be06323fafa19478fae874fcc04f3853 *man/getMonteCarloSample-method.Rd
6ac38d3b54903ff44e1b4489522dde75 *man/getReads-method.Rd
b67b2662553577782b2d33b04a563f71 *man/getSampleIDs-method.Rd
c195ff5eca892de2a6ce3cf879371603 *man/getScaleSamples-method.Rd
c8fac1e4822f71d6fa493d41660a011d *man/interpretGamma.Rd
94cce585b359cd37e1e3371449e16913 *man/numConditions-method.Rd
2c0ee1913c5cb0eb30b0cf1a7f235858 *man/numFeatures-method.Rd
ec008e07f71fef06fe2acb03a928c884 *man/numMCInstances-method.Rd
b0424b744b275776d1fc31ffeca79db9 *man/plotGamma.Rd
24f21f53023b972fda53b6a7ab20c767 *man/selex.Rd
6afbfaba2b29772802df86b127d53757 *man/synth2.Rd
5277f081488673253111d9f40bf506d2 *tests/testthat.R
c379bc4da773d81975c237fb17aba5a4 *tests/testthat/test-aldex.glm.v.ttest.R
7c6a078f4514e4814de286d175662839 *tests/testthat/test-aldex.kw.R
85ac096a3ee38a2f2fdd760d39b297cc *tests/testthat/test-aldex.ttest.R
e16ae75889f1a0df55fabf00860ac360 *tests/testthat/test-clr-conds.R
e1796bb91b81dfa4ec89e891640b8485 *tests/testthat/test-scaleSim.R
74825789b1aef700353f8fe12fcc9633 *tests/testthat/test-stats.fast.R
c599cd95010e71777ce36800c2e782e9 *vignettes/ALDEx2_vignette.Rmd
d3893686e3f72be1a5a681085683c50b *vignettes/aldex.bib
a7a1b489fcc0f4cf2c61b13fbbf273f2 *vignettes/main-figure-final-vertical.pdf
ab3ec7848ab26c3459cd7f996ea93c82 *vignettes/main-figure-final-vertical.png
562828f94b537b9b241c5e60c5960c43 *vignettes/scaleSim_vignette.Rmd
