koinar
This is the released version of koinar; for the devel version, see koinar.
KoinaR - Remote machine learning inference using Koina
Bioconductor version: Release (3.23)
A client to simplify fetching predictions from the Koina web service. Koina is a model repository enabling the remote execution of models. Predictions are generated as a response to HTTP/S requests, the standard protocol used for nearly all web traffic.
Author: Ludwig Lautenbacher [aut, cre]
, Christian Panse [aut]
Maintainer: Ludwig Lautenbacher <ludwig.lautenbacher at tum.de>
citation("koinar")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("koinar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("koinar")| On using the R lang client for koina | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Proteomics, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (2 years) |
| License | Apache License 2.0 |
| Depends | R (>= 4.3) |
| Imports | httr, jsonlite, methods, utils |
| System Requirements | |
| URL | https://github.com/wilhelm-lab/koina |
| Bug Reports | https://github.com/wilhelm-lab/koina/issues |
See More
| Suggests | BiocManager, BiocStyle(>= 2.26), httptest, knitr, lattice, testthat, OrgMassSpecR, protViz, S4Vectors |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | koinar_1.6.0.tar.gz |
| Windows Binary (x86_64) | koinar_1.6.0.zip |
| macOS Binary (big-sur-x86_64) | koinar_1.6.0.tgz |
| macOS Binary (sonoma-arm64) | koinar_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/koinar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/koinar |
| Bioc Package Browser | https://code.bioconductor.org/browse/koinar/ |
| Package Short Url | https://bioconductor.org/packages/koinar/ |
| Package Downloads Report | Download Stats |