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iCOBRA

Comparison and Visualization of Ranking and Assignment Methods


Bioconductor version: Release (3.19)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")
iCOBRA User Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>=2)
Depends R (>= 4.4.0)
Imports shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown, utils, rlang
System Requirements
URL https://github.com/csoneson/iCOBRA
Bug Reports https://github.com/csoneson/iCOBRA/issues
See More
Suggests knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me muscat
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.32.0.tar.gz
Windows Binary iCOBRA_1.32.0.zip
macOS Binary (x86_64) iCOBRA_1.32.0.tgz
macOS Binary (arm64) iCOBRA_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA
Bioc Package Browser https://code.bioconductor.org/browse/iCOBRA/
Package Short Url https://bioconductor.org/packages/iCOBRA/
Package Downloads Report Download Stats