SharedObject
This is the released version of SharedObject; for the devel version, see SharedObject.
Sharing R objects across multiple R processes without memory duplication
Bioconductor version: Release (3.23)
This package is developed for facilitating parallel computing in R. It is capable to create an R object in the shared memory space and share the data across multiple R processes. It avoids the overhead of memory dulplication and data transfer, which make sharing big data object across many clusters possible.
Author: Jiefei Wang [aut, cre], Martin Morgan [aut]
Maintainer: Jiefei Wang <szwjf08 at gmail.com>
citation("SharedObject")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SharedObject")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SharedObject")| quickStart | HTML | R Script |
| quickStartChinese | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.25.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (7 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0) |
| Imports | Rcpp, methods, stats, BiocGenerics |
| System Requirements | GNU make, C++11 |
| URL | |
| Bug Reports | https://github.com/Jiefei-Wang/SharedObject/issues |
See More
| Suggests | testthat, parallel, knitr, rmarkdown, BiocStyle |
| Linking To | BH, Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | NewWave |
| Suggests Me | ClustAssess |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SharedObject_1.25.0.tar.gz |
| Windows Binary (x86_64) | SharedObject_1.25.0.zip |
| macOS Binary (big-sur-x86_64) | SharedObject_1.25.0.tgz |
| macOS Binary (sonoma-arm64) | SharedObject_1.25.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SharedObject |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SharedObject |
| Bioc Package Browser | https://code.bioconductor.org/browse/SharedObject/ |
| Package Short Url | https://bioconductor.org/packages/SharedObject/ |
| Package Downloads Report | Download Stats |