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Interactive visualization in genomics

Bioconductor version: Release (3.19)

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Author: Michal Swirski [aut, cre, cph], Haakon Tjeldnes [aut, ctb], Kornel Labun [ctb]

Maintainer: Michal Swirski <michal.swirski at>

Citation (from within R, enter citation("RiboCrypt")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

RiboCrypt_app_tutorial.html HTML R Script
RiboCrypt_overview.html HTML R Script
Reference Manual PDF


biocViews RNASeq, RiboSeq, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License MIT + file LICENSE
Depends R (>= 3.6.0), ORFik(>= 1.13.12)
Imports bslib, BiocGenerics, BiocParallel, Biostrings, data.table, dplyr, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2, htmlwidgets, httr, IRanges, jsonlite, knitr, markdown, NGLVieweR, plotly, rlang, RCurl, shiny, shinycssloaders, shinyhelper, shinyjqui, stringr
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Suggests testthat, rmarkdown, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RiboCrypt_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64) RiboCrypt_1.10.0.tgz
macOS Binary (arm64) RiboCrypt_1.10.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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