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MEIGOR

MEIGOR - MEtaheuristics for bIoinformatics Global Optimization


Bioconductor version: Release (3.19)

MEIGOR provides a comprehensive environment for performing global optimization tasks in bioinformatics and systems biology. It leverages advanced metaheuristic algorithms to efficiently search the solution space and is specifically tailored to handle the complexity and high-dimensionality of biological datasets. This package supports various optimization routines and is integrated with Bioconductor's infrastructure for a seamless analysis workflow.

Author: Jose A. Egea [aut, cre], David Henriques [aut], Alexandre Fdez. Villaverde [aut], Thomas Cokelaer [aut]

Maintainer: Jose A. Egea <josea.egea at gmail.com>

Citation (from within R, enter citation("MEIGOR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MEIGOR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEIGOR")
MEIGOR: a software suite based on metaheuristics for global optimization in systems biology and bioinformatics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Optimization, Software, SystemsBiology
Version 1.38.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 4.0), Rsolnp, snowfall, deSolve, CNORode
Imports
System Requirements
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Suggests CellNOptR, knitr, BiocStyle
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MEIGOR_1.38.0.tar.gz
Windows Binary MEIGOR_1.38.0.zip
macOS Binary (x86_64) MEIGOR_1.38.0.tgz
macOS Binary (arm64) MEIGOR_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MEIGOR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MEIGOR
Bioc Package Browser https://code.bioconductor.org/browse/MEIGOR/
Package Short Url https://bioconductor.org/packages/MEIGOR/
Package Downloads Report Download Stats