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KEGGREST

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)


Bioconductor version: Release (3.19)

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see ). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Author: Dan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("KEGGREST")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGREST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGREST")
Accessing the KEGG REST API HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, KEGG, Pathways, Software, ThirdPartyClient
Version 1.44.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, httr, png, Biostrings
System Requirements
URL https://bioconductor.org/packages/KEGGREST
Bug Reports https://github.com/Bioconductor/KEGGREST/issues
See More
Suggests RUnit, BiocGenerics, knitr, markdown
Linking To
Enhances
Depends On Me ROntoTools, Hiiragi2013
Imports Me ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, gage, ginmappeR, MetaboSignal, MWASTools, PADOG, pairkat, pathview, SBGNview, SMITE, transomics2cytoscape, YAPSA
Suggests Me Category, categoryCompare, gatom, GenomicRanges, globaltest, iSEEu, MLP, padma, rGREAT, RTopper, SomaScan.db, CALANGO, ggpicrust2, maGUI, phoenics, ReporterScore, scDiffCom
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGREST_1.44.0.tar.gz
Windows Binary KEGGREST_1.44.0.zip
macOS Binary (x86_64) KEGGREST_1.44.0.tgz
macOS Binary (arm64) KEGGREST_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/KEGGREST
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGREST
Bioc Package Browser https://code.bioconductor.org/browse/KEGGREST/
Package Short Url https://bioconductor.org/packages/KEGGREST/
Package Downloads Report Download Stats