IsoCorrectoRGUI
This is the released version of IsoCorrectoRGUI; for the devel version, see IsoCorrectoRGUI.
Graphical User Interface for IsoCorrectoR
Bioconductor version: Release (3.23)
IsoCorrectoRGUI is a Graphical User Interface for the IsoCorrectoR package. IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously).
Author: Christian Kohler [cre, aut], Paul Kuerner [aut], Paul Heinrich [aut]
Maintainer: Christian Kohler <christian.kohler at ur.de>
citation("IsoCorrectoRGUI")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IsoCorrectoRGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IsoCorrectoRGUI")| IsoCorrectoR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, ImmunoOncology, MassSpectrometry, Metabolomics, Preprocessing, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | IsoCorrectoR, readxl, tcltk2, tcltk, utils |
| System Requirements | |
| URL | https://genomics.ur.de/files/IsoCorrectoRGUI |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | IsoCorrectoR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IsoCorrectoRGUI_1.28.0.tar.gz |
| Windows Binary (x86_64) | IsoCorrectoRGUI_1.28.0.zip |
| macOS Binary (big-sur-x86_64) | IsoCorrectoRGUI_1.28.0.tgz |
| macOS Binary (sonoma-arm64) | IsoCorrectoRGUI_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IsoCorrectoRGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IsoCorrectoRGUI |
| Bioc Package Browser | https://code.bioconductor.org/browse/IsoCorrectoRGUI/ |
| Package Short Url | https://bioconductor.org/packages/IsoCorrectoRGUI/ |
| Package Downloads Report | Download Stats |