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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Tools to work with a Compendium of 181000 human transcriptome sequencing studies

Bioconductor version: Release (3.19)

Provide tools for working with a compendium of human transcriptome sequences (originally htxcomp).

Author: Sean Davis, Vince Carey

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("HumanTranscriptomeCompendium")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

HumanTranscriptomeCompendium -- a cloud-resident collection of sequenced human transcriptomes HTML R Script
Reference Manual PDF


biocViews Infrastructure, Software, Transcriptomics
Version 1.20.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports shiny, ssrch, S4Vectors, SummarizedExperiment, utils, BiocManager
System Requirements
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Suggests knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat, rhdf5client, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package HumanTranscriptomeCompendium_1.20.0.tar.gz
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macOS Binary (x86_64) HumanTranscriptomeCompendium_1.20.0.tgz
macOS Binary (arm64) HumanTranscriptomeCompendium_1.20.0.tgz
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Source Repository (Developer Access) git clone
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