ChromHeatMap
Heat map plotting by genome coordinate
Bioconductor version: Release (3.20)
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
Author: Tim F. Rayner
Maintainer: Tim F. Rayner <tfrayner at gmail.com>
Citation (from within R, enter
citation("ChromHeatMap")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChromHeatMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChromHeatMap")| Plotting expression data with ChromHeatMap | R Script | |
| Reference Manual |
Details
| biocViews | Software, Visualization |
| Version | 1.60.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (15 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0) |
| Imports | Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges |
| System Requirements | |
| URL |
See More
| Suggests | ALL, hgu95av2.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ChromHeatMap_1.60.0.tar.gz |
| Windows Binary (x86_64) | ChromHeatMap_1.60.0.zip (64-bit only) |
| macOS Binary (x86_64) | ChromHeatMap_1.60.0.tgz |
| macOS Binary (arm64) | ChromHeatMap_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChromHeatMap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChromHeatMap |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChromHeatMap/ |
| Package Short Url | https://bioconductor.org/packages/ChromHeatMap/ |
| Package Downloads Report | Download Stats |