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Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Release (3.19)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at>

Citation (from within R, enter citation("ChIPseqR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Introduction to ChIPseqR PDF R Script
Reference Manual PDF


biocViews ChIPSeq, Infrastructure, Software
Version 1.58.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, S4Vectors(>= 0.9.25)
Imports Biostrings, fBasics, GenomicRanges, IRanges(>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils
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Follow Installation instructions to use this package in your R session.

Source Package ChIPseqR_1.58.0.tar.gz
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macOS Binary (x86_64) ChIPseqR_1.58.0.tgz
macOS Binary (arm64) ChIPseqR_1.58.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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