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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Bioconductor version: Release (3.19)

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

Author: Taosheng Xu [aut, cre]

Maintainer: Taosheng Xu <taosheng.x at>

Citation (from within R, enter citation("CancerSubtypes")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews Clustering, GeneExpression, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>= 2)
Depends R (>= 4.0), sigclust, NMF
Imports cluster, impute, limma, ConsensusClusterPlus, grDevices, survival
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Suggests BiocGenerics, knitr, RTCGA.mRNA, rmarkdown
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