CNVgears
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results
Bioconductor version: Release (3.19)
This package contains a set of functions to perform several type of processing and analysis on CNVs calling pipelines/algorithms results in an integrated manner and regardless of the raw data type (SNPs array or NGS). It provides functions to combine multiple CNV calling results into a single object, filter them, compute CNVRs (CNV Regions) and inheritance patterns, detect genic load, and more. The package is best suited for studies in human family-based cohorts.
Author: Simone Montalbano [cre, aut]
Maintainer: Simone Montalbano <simone.montalbano at protonmail.com>
citation("CNVgears")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNVgears")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | Preprocessing, Software, WorkflowStep |
Version | 1.12.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | GPL-3 |
Depends | R (>= 4.1), data.table |
Imports | ggplot2 |
System Requirements | |
URL | |
Bug Reports | https://github.com/SinomeM/CNVgears/issues |
See More
Suggests | VariantAnnotation, DelayedArray, knitr, biomaRt, evobiR, rmarkdown, devtools, cowplot, usethis, scales, testthat, GenomicRanges, cn.mops, R.utils |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | CNVgears_1.12.0.zip |
macOS Binary (x86_64) | CNVgears_1.12.0.tgz |
macOS Binary (arm64) | CNVgears_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CNVgears |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNVgears |
Package Short Url | https://bioconductor.org/packages/CNVgears/ |
Package Downloads Report | Download Stats |