Package: msmsTests
Type: Package
Title: LC-MS/MS Differential Expression Tests
Version: 1.48.0
Date: 2013-10-02
Author: Josep Gregori, Alex Sanchez, and Josep Villanueva
Maintainer: Josep Gregori i Font <josep.gregori@gmail.com>
Depends: R (>= 3.0.1), MSnbase, msmsEDA
Imports: edgeR, qvalue
Suggests: xtable
Description: Statistical tests for label-free LC-MS/MS data by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR package.The three models admit blocking factors to control for nuissance variables.To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.
License: GPL-2
biocViews: ImmunoOncology, Software, MassSpectrometry, Proteomics
git_url: https://git.bioconductor.org/packages/msmsTests
git_branch: RELEASE_3_22
git_last_commit: 51afab8
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:36:13 UTC; biocbuild
Built: R 4.5.1; ; 2025-10-30 12:27:11 UTC; unix
