methodical-package	methodical-package
.calculate_regions_intersections	dot-calculate_regions_intersections
.chunk_regions	dot-chunk_regions
.count_covered_bases	dot-count_covered_bases
.find_tmrs_single	dot-find_tmrs_single
.summarize_chunk_methylation	dot-summarize_chunk_methylation
.test_tmrs	dot-test_tmrs
.tss_correlations	dot-tss_correlations
.tss_iterator	dot-tss_iterator
annotateGRanges	annotateGRanges
annotatePlot	annotatePlot
calculateMethSiteTranscriptCors	calculateMethSiteTranscriptCors
calculateRegionMethylationTranscriptCors	calculateRegionMethylationTranscriptCors
calculateSmoothedMethodicalScores	calculateSmoothedMethodicalScores
correct_correlation_pvalues	correct_correlation_pvalues
createRandomRegions	createRandomRegions
expand_granges	expand_granges
extractGRangesMethSiteValues	extractGRangesMethSiteValues
extractMethSitesFromGenome	extractMethSitesFromGenome
findTMRs	findTMRs
hg38_cpgs_subset	hg38_cpgs_subset
kallistoIndex	kallistoIndex
kallistoQuantify	kallistoQuantify
liftoverMethRSE	liftoverMethRSE
maskRangesInRSE	maskRangesInRSE
methodical	methodical-package
plotMethodicalScores	plotMethodicalScores
plotMethSiteCorCoefs	plotMethSiteCorCoefs
plotRegionValues	plotRegionValues
plotTMRs	plotTMRs
rangesRelativeToTSS	rangesRelativeToTSS
rapidCorTest	rapidCorTest
sampleMethSites	sampleMethSites
strandedDistance	strandedDistance
summarizeRegionMethylation	summarizeRegionMethylation
sumTranscriptValuesForGenes	sumTranscriptValuesForGenes
tubb6_correlation_plot	tubb6_correlation_plot
tubb6_cpg_meth_transcript_cors	tubb6_cpg_meth_transcript_cors
tubb6_meth_rse	tubb6_meth_rse
tubb6_tmrs	tubb6_tmrs
tubb6_transcript_counts	tubb6_transcript_counts
tubb6_tss	tubb6_tss
TumourMethDatasets	TumourMethDatasets
