BamTallyParam-class     Class '"BamTallyParam"'
GmapGenome-class        Class '"GmapGenome"'
GmapGenomeDirectory-class
                        Class '"GmapGenomeDirectory"'
GmapSnpDirectory-class
                        Class '"GmapSnpDirectory"'
GmapSnps-class          Class '"GmapSnps"'
GsnapOutput-class       Class '"GsnapOutput"'
GsnapParam-class        Class '"GsnapParam"'
TP53Genome              Demo genome around TP53
bam_tally-methods       Per-position Alignment Summaries
cmetindex               Call the cmetindex command
directory               Get the Path to the Location on Disk from a
                        gmapR Class
gmap_build-methods      Build Gmap/Gsnap Genome
gsnap-methods           Align a Set of Reads Using the GSNAP Aligner
makeGmapGenomePackage   Function to create a GmapGenome package from a
                        GmapGenome object
path,GmapBamReader-method
                        gmapR2 internals
