BiodbConfig             A class for storing configuration values.
BiodbConn               The mother abstract class of all database
                        connectors.
BiodbConnBase           Base class of 'BiodbConn' for encapsulating all
                        needed information for database access.
BiodbCsvEntry           Entry class for content in CSV format.
BiodbDbInfo             A class for describing the characteristics of a
                        database.
BiodbDbsInfo            A class for describing the available databases.
BiodbEntry              The mother abstract class of all database entry
                        classes.
BiodbEntryField         A class for describing an entry field.
BiodbEntryFields        A class for handling description of all entry
                        fields.
BiodbFactory            A class for constructing biodb objects.
BiodbHtmlEntry          Entry class for content in HTML format.
BiodbJsonEntry          Entry class for content in JSON format.
BiodbListEntry          Entry class for content in list format.
BiodbMain               The central class of the biodb package.
BiodbSdfEntry           Entry class for content in SDF format.
BiodbTestMsgAck         A class for acknowledging messages during
                        tests.
BiodbTxtEntry           Entry class for content in text format.
BiodbXmlEntry           Entry class for content in XML format.
CompCsvFileConn         Compound CSV File connector class.
CompCsvFileEntry        Compound CSV File entry class.
CompSqliteConn          Class for handling a Compound database in
                        SQLite format.
CompSqliteEntry         Compound SQLite entry class.
CsvFileConn             CSV File connector class.
FileTemplate            File template class.
MassCsvFileConn         Mass CSV File connector class.
MassCsvFileEntry        Mass CSV File entry class.
MassSqliteConn          Class for handling a Mass spectrometry database
                        in SQLite format.
MassSqliteEntry         Mass spectra SQLite entry class.
Progress                Progress class.
Range                   Range class.
SqliteConn              SQLite connector class.
TestRefEntries          A class for accessing the test reference
                        entries.
abstractClass           Declares a class as abstract.
abstractMethod          Declares a method as abstract
biodb-package           biodb: Biodb, a Library and a Development
                        Framework for Connecting to Chemical and
                        Biological Databases
checkDeprecatedCacheFolders
                        Check deprecated default cache folders.
closeMatchPpm           Close match PPM
connNameToClassPrefix   Convert connector name into class prefix.
createBiodbTestInstance
                        Creating a BiodbMain instance for tests.
df2str                  Convert a data.frame into a string.
error                   Throw an error and log it too.
error0                  Throw an error and log it too.
getConnClassName        Get connector class name.
getConnTypes            Get connector types.
getDefaultCacheDir      Get default cache folder.
getEntryClassName       Get entry class name.
getEntryTypes           Get entry types.
getLogger               Get the main package logger.
listTestRefEntries      List test reference entries.
loadFileContents        Loads the contents of files in memory.
logDebug                Log debug message.
logDebug0               Log debug message.
logInfo                 Log information message.
logInfo0                Log information message.
logTrace                Log trace message.
logTrace0               Log trace message.
lst2str                 Convert a list into a string.
newInst                 Create a new BiodbMain instance.
runGenericTests         Run generic tests.
testContext             Set a test context.
testThat                Run a test.
warn                    Throw a warning and log it too.
warn0                   Throw a warning and log it too.
