# Generated by roxygen2: do not edit by hand

export(clusterCorrelatingBarcodes)
export(createBarbieQ)
export(plotBarcodeHeatmap)
export(plotBarcodeMA)
export(plotBarcodePValue)
export(plotBarcodePairCorrelation)
export(plotBarcodePareto)
export(plotBarcodeProportion)
export(plotBarcodeSankey)
export(plotSamplePairCorrelation)
export(plotSignifBarcodeHeatmap)
export(plotSignifBarcodeProportion)
export(tagTopBarcodes)
export(testBarcodeSignif)
import(ComplexHeatmap)
import(data.table)
import(ggplot2)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(circlize,colorRamp2)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,recode)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,setdiff)
importFrom(dplyr,setequal)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(graphics,title)
importFrom(grid,gpar)
importFrom(igraph,clusters)
importFrom(igraph,graph_from_edgelist)
importFrom(limma,contrasts.fit)
importFrom(limma,decideTests)
importFrom(limma,duplicateCorrelation)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(logistf,logistf)
importFrom(magrittr,"%>%")
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,end)
importFrom(stats,glm)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,setNames)
importFrom(stats,start)
importFrom(tidyr,gather)
importFrom(tidyr,pivot_longer)
importFrom(utils,combn)
importFrom(utils,menu)
