appTEKRABber            appTEKRABber
corrOrthologTE          Estimate correlation comparing orthologs and
                        TEs
ctInputDE               Input expression data of gene/TE for
                        differentially expressed analysis within same
                        species
DECorrInputs            Generate all the input files for TEKRABber
                        downstream analysis
DEgeneTE                Estimate differentially expressed genes and TEs
fetchDataHmChimp        Example output comparing human and chimpanzee
                        data using orhtologScale()
hg38_panTro6_rmsk       Repeatmasker track annotations with human and
                        chimpanzee
orthologScale           Normalized orthologous genes and TEs between
                        two species
prepareRMSK             Prepare a table from two species RepeatMakser
                        track from UCSC genome Table
rcpp_corr               Estimate the correlation between genes and
                        transposable elements
speciesCounts           Gene/TE expression data from human/chimpanzee
                        brain RNA-seq
TEKRABber               An R package estimates the correlations of
                        orthologs and transposable elements between two
                        species
