spacexr-package	spacexr-package
cache_Q_all	cache_Q_all
cell_types	cell_types
cell_types,Reference-method	cell_types
cell_types<-	cell_types-set
cell_types<-,Reference-method	cell_types
cell_type_info	cell_type_info
cell_type_info,RctdConfig-method	cell_type_info
cell_type_info<-	cell_type_info-set
cell_type_info<-,RctdConfig-method	cell_type_info
chooseSigmaC	chooseSigmaC
computeCellTypeInfo	computeCellTypeInfo
config	config
config,RctdConfig-method	config
config<-	config-set
config<-,RctdConfig-method	config
coords	coords
coords,SpatialRNA-method	coords
coords<-	coords-set
coords<-,SpatialRNA-method	coords
counts	counts
counts,Reference-method	counts
counts,SpatialRNA-method	counts
counts<-	counts-set
counts<-,Reference-method	counts
counts<-,SpatialRNA-method	counts
createCellTypeInfo	createCellTypeInfo
createRctd	createRCTD
createRctdConfig	createRctdConfig
createReference	createReference
createSpatialRNA	createSpatialRNA
create_spe_doublet	create_spe_doublet
create_spe_from_columns	create_spe_from_columns
create_spe_full	create_spe_full
create_spe_multi	create_spe_multi
filterPixelsAndGetVars	filterPixelsAndGetVars
fitBulk	fitBulk
fitPixels	fitPixels
getDeGenes	getDeGenes
getNormRef	getNormRef
internal_vars	internal_vars
internal_vars,RctdConfig-method	internal_vars
internal_vars<-	internal_vars-set
internal_vars<-,RctdConfig-method	internal_vars
load_Q_all	load_Q_all
load_SQ_all	load_SQ_all
make_cache	make_cache
nUMI	nUMI
nUMI,Reference-method	nUMI
nUMI,SpatialRNA-method	nUMI
nUMI<-	nUMI-set
nUMI<-,Reference-method	nUMI
nUMI<-,SpatialRNA-method	nUMI
plotAllWeights	plotAllWeights
plotCellTypeWeight	plotCellTypeWeight
process_beads_batch	process_beads_batch
RctdConfig-class	RctdConfig-class
rctdSim	rctdSim
Reference-class	Reference-class
referenceToCellTypeInfo	referenceToCellTypeInfo
runRctd	runRCTD
set_likelihood_vars	set_likelihood_vars
show,RctdConfig-method	RctdConfig-class
show,Reference-method	Reference-class
show,SpatialRNA-method	SpatialRNA-class
spacexr	spacexr-package
spatialRNA	SpatialRNA
spatialRNA,RctdConfig-method	SpatialRNA
SpatialRNA-class	SpatialRNA-class
spatialRNA<-	spatialRNA-set
spatialRNA<-,RctdConfig-method	SpatialRNA
summarizedExperimentToSpatialRNA	summarizedExperimentToSpatialRNA
url_ok	url_ok
