.fftRegion              FFT Region
.getThreshold           Threshold getter
.loadFiles              File loader Higher order function to import BAM
                        or Bowtie files. Deals with wether type is
                        'single' or 'paired' and with the number of
                        input files
.loadPairedBam          Load a paired-end-end BAM
.loadSingleBam          Load a single-end BAM
.mid                    Find midpoints
.processStrand          Process a given strand from a BAM file to read
.unlist_as_integer      Unlist an IRanges object into a vector
.vectorizedAll          Vectorized version of 'all'
.xlapply                mclapply warapper
controlCorrection       Correct experimental profiles with control
                        sample
coverage.rpm            Coverage calculation and normalization to reads
                        per million (rpm)
export.bed              Export ranges in BED format
export.wig              Export values in WIG format
filterFFT               Clean noise and smoothing for genomic data
                        using Fourier-analysis
fragmentLenDetect       Fragments length detection from single-end
                        sequencing samples
mergeCalls              Automatic merging of overlapped nucleosome
                        calls
nucleR-package          Nucleosome positioning package for R
nucleosome_htseq        Example reads from high-troughtput sequencing
                        nucleosome positioning experiment
nucleosome_tiling       Example intensities from Tiling Microarray
                        nucleosome positioning experiment
pcKeepCompDetect        Auto detection of a fitted 'pcKeepComp' param
                        for filterFFT function
peakDetection           Detect peaks (local maximum) from values series
peakScoring             Peak scoring function
plotPeaks               Nucleosome calling plot function
processReads            Process reads from High-Troughtput Sequencing
                        experiments
processTilingArray      Obtain and clean nucleosome positioning data
                        from tiling array
readBAM                 Import reads from a list of BAM files.
readBowtie              Import reads from a vector of Bowtie files
syntheticNucMap         Generates a synthetic nucleosome map
