Workflow for non-targeted LC-MS metabolic profiling

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Documentation for package ‘notameStats’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cohens_d	Cohen's D
fit_rf	Fit Random Forest
fold_change	Fold change
importance_rf	Feature importance in random forest
mixomics_pls	PLS
mixomics_plsda	PLS-DA
mixomics_plsda_optimize	PLS-DA
mixomics_pls_optimize	PLS
mixomics_splsda_optimize	PLS-DA
mixomics_spls_optimize	PLS
muvr_analysis	Multivariate modelling with minimally biased variable selection (MUVR)
perform_auc	Area under curve
perform_correlation_tests	Correlation test
perform_homoscedasticity_tests	Test homoscedasticity
perform_kruskal_wallis	Kruskal-Wallis rank-sum test
perform_lm	Linear models
perform_lmer	Linear mixed models
perform_lm_anova	Linear models ANOVA table
perform_logistic	Logistic regression
perform_non_parametric	Pairwise and paired non-parametric tests
perform_oneway_anova	Welch's ANOVA and classic ANOVA
perform_permanova	PERMANOVA
perform_t_test	Pairwise and paired t-tests
pls	PLS
pls_da	PLS-DA
summarize_results	Statistics cleaning
summary_statistics	Summary statistics