Make fast and memory efficient BED file queries, summaries and
matrices
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Documentation for package ‘iscream’ version 1.0.0
Help Pages
| get_df_string | DataFrame to region strings |
| get_granges_string | GRanges to region strings |
| get_log_level | Set and get logging level |
| get_threads | Get the number of available threads |
| htslib_version | Get htslib version and available features |
| make_mat | Make a matrix from a numeric column of BED files |
| make_mat_bsseq | Make M/beta and coverage matrices from WGBS BED files |
| make_mat_gr | Make a matrix from a numeric column of BED files |
| make_mat_se | Make a matrix from a numeric column of BED files |
| query_chroms | Query the chromosomes or seqnames from a vector of BED files |
| set_log_level | Set and get logging level |
| set_threads | Set the number of available threads |
| summarize_meth_regions | Summarize methylation information over genomic regions |
| summarize_regions | Summarize information over genomic regions from any BED file |
| tabix | Query records from tabixed BED files |
| tabix_gr | Query records from tabixed BED files |
| tabix_raw | Query records from tabixed BED files |