Package: cbaf
biocViews: Software, AssayDomain, DNAMethylation, GeneExpression,
        Transcription, Microarray,ResearchField, BiomedicalInformatics,
        ComparativeGenomics, Epigenetics, Genetics, Transcriptomics
Title: Automated functions for comparing various omic data from
        cbioportal.org
Version: 1.32.0
Authors@R: c(person("Arman", "Shahrisa", role = c("aut", "cre", "cph"),
                     email = "shahrisa.arman@hotmail.com"),
            person("Maryam", "Tahmasebi Birgani", role = "aut",
                     email = "tahmasebi-ma@ajums.ac.ir"))
Description: This package contains functions that allow analysing and comparing 
             omic data across various cancers/cancer subgroups easily. So far, 
             it is compatible with RNA-seq, microRNA-seq, microarray and 
             methylation datasets that are stored on cbioportal.org.
Depends: R (>= 4.1)
License: Artistic-2.0
Encoding: UTF-8
Imports: BiocFileCache, RColorBrewer, cBioPortalData, genefilter,
        gplots, grDevices, stats, utils, openxlsx, zip
NeedsCompilation: no
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: 'cbaf-obtainMultipleStudies.R' 'cbaf-obtainOneStudy.R'
        'cbaf-automatedStatistics.R' 'cbaf-availableData.R'
        'cbaf-cleanDatabase.R' 'cbaf-constants.R'
        'cbaf-heatmapOutput.R' 'cbaf-processMultipleStudies.R'
        'cbaf-processOneStudy.R' 'cbaf-xlsxOutput.R' 'zzz.R'
git_url: https://git.bioconductor.org/packages/cbaf
git_branch: RELEASE_3_22
git_last_commit: b77921d
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 02:13:31 UTC; biocbuild
Author: Arman Shahrisa [aut, cre, cph],
  Maryam Tahmasebi Birgani [aut]
Maintainer: Arman Shahrisa <shahrisa.arman@hotmail.com>
Built: R 4.5.1; ; 2025-10-30 09:18:26 UTC; unix
