Methods for BCR single-cell embedding

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Documentation for package ‘Ibex’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Ibex-package	Ibex: Methods for BCR single-cell embedding
combineExpandedBCR	combineBCR for CDR1/2/3 sequences
CoNGAfy	Reduce a Single-Cell Object to Representative Cells
filter.cells	Filter Single-Cell Data Based on CDR3 Sequences
Ibex	Ibex: Methods for BCR single-cell embedding
ibex_example	A SingleCellExperiment object with 200 randomly-sampled B cells with BCR sequences from the 10x Genomics 2k_BEAM-Ab_Mouse_HEL_5pv2 dataset.
Ibex_matrix	Ibex Matrix Interface
ibex_vdj	Full filtered_annotated_contig.csv from the 10x 2k_BEAM-Ab_Mouse_HEL_5pv2
runIbex	Ibex Single-Cell Calculation