CoverageView-package	CoverageView-package
.bed.to.GRanges	CoverageView-internal
.cov.bin	CoverageView-internal
.do.normalization	CoverageView-internal
.gff.to.GRanges	CoverageView-internal
cov.bin	CoverageView-internal
cov.bin,ANY,missing,numeric,GRanges,missing-method	CoverageView-internal
cov.bin,ANY,missing,numeric,missing,CoverageBamFile,missing-method	CoverageView-internal
cov.bin,ANY,missing,numeric,missing,CoverageBigWigFile,missing-method	CoverageView-internal
cov.bin,ANY,missing,numeric,missing,missing-method	CoverageView-internal
cov.bin,ANY,numeric,missing,GRanges,missing-method	CoverageView-internal
cov.bin,ANY,numeric,missing,missing,CoverageBamFile,missing-method	CoverageView-internal
cov.bin,ANY,numeric,missing,missing,CoverageBigWigFile,missing-method	CoverageView-internal
cov.bin,ANY,numeric,missing,missing,missing-method	CoverageView-internal
cov.bin,missing,missing,missing,GRanges,character-method	CoverageView-internal
cov.bin,missing,missing,missing,GRanges,missing,character-method	CoverageView-internal
cov.bin,missing,missing,missing,missing,character-method	CoverageView-internal
cov.bin,missing,missing,missing,missing,CoverageBamFile,character-method	CoverageView-internal
cov.bin-methods	CoverageView-internal
cov.interval	cov.interval
cov.interval,CoverageBamFile,CoverageBamFile-method	cov.interval
cov.interval,CoverageBamFile-method	cov.interval
cov.interval,CoverageBigWigFile,CoverageBigWigFile-method	cov.interval
cov.interval,CoverageBigWigFile-method	cov.interval
cov.matrix	cov.matrix
cov.matrix,ANY,ANY-method	cov.matrix
cov.matrix,ANY,missing-method	cov.matrix
CoverageBamFile	CoverageBamFile-class
CoverageBamFile-class	CoverageBamFile-class
CoverageBigWigFile	CoverageBigWigFile-class
CoverageBigWigFile-class	CoverageBigWigFile-class
CoverageView	CoverageView-package
CoverageView-internal	CoverageView-internal
DF_H3K36me3	DF_H3K36me3
DF_H3K36me3_control	DF_H3K36me3_control
DF_H3K4me3	DF_H3K4me3
DF_H3K4me3_ctl	DF_H3K4me3_ctl
DF_H3K4me3_nopeaks_ratios	DF_H3K4me3_nopeaks_ratios
draw.heatmap	draw.heatmap
draw.heatmap,list-method	draw.heatmap
draw.heatmap,matrix-method	draw.heatmap
draw.profile	draw.profile
draw.profile,list-method	draw.profile
draw.profile,matrix-method	draw.profile
export.wig	export.wig
export.wig,numeric-method	export.wig
FoxA1_chr19	FoxA1_chr19
genome.covplot.cumdepth	genome.covplot.cumdepth
genome.covplot.cumdepth,CoverageBamFile-method	genome.covplot.cumdepth
genome.covplot.cumdepth,list-method	genome.covplot.cumdepth
genome.covplot.depth	genome.covplot.depth
genome.covplot.depth,CoverageBamFile-method	genome.covplot.depth
genome.covplot.depth,list-method	genome.covplot.depth
imageScale	CoverageView-internal
path,CoverageBamFile-method	CoverageBamFile-class
reads_mapped,CoverageBamFile-method	CoverageBamFile-class
run_type,CoverageBamFile-method	CoverageBamFile-class
show,CoverageBamFile-method	CoverageBamFile-class
show,CoverageBigWigFile-method	CoverageBigWigFile-class
write.profile	write.profile
write.profile,matrix-method	write.profile
